Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF95_RS05510 Genome accession   NZ_CP094136
Coordinates   1146737..1147141 (-) Length   134 a.a.
NCBI ID   WP_245066481.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141737..1152141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF95_RS05475 (MPF95_05475) - 1142706..1143491 (-) 786 WP_245066471.1 hypothetical protein -
  MPF95_RS05480 (MPF95_05480) - 1143497..1143883 (-) 387 WP_245066473.1 DUF1294 domain-containing protein -
  MPF95_RS05485 (MPF95_05485) - 1144210..1144596 (-) 387 WP_245061784.1 lysozyme -
  MPF95_RS05490 (MPF95_05490) - 1144639..1144887 (-) 249 WP_245066475.1 lysozyme -
  MPF95_RS05495 (MPF95_05495) - 1144898..1145458 (-) 561 WP_245066477.1 hypothetical protein -
  MPF95_RS05500 (MPF95_05500) - 1145442..1145780 (-) 339 WP_000699916.1 hypothetical protein -
  MPF95_RS05505 (MPF95_05505) - 1145969..1146613 (-) 645 WP_245066479.1 tetratricopeptide repeat protein -
  MPF95_RS05510 (MPF95_05510) dprB 1146737..1147141 (-) 405 WP_245066481.1 Holliday junction resolvase RuvX Machinery gene
  MPF95_RS05515 (MPF95_05515) dprA 1147138..1147938 (-) 801 WP_245066483.1 DNA-processing protein DprA Machinery gene
  MPF95_RS05520 (MPF95_05520) minE 1147950..1148183 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF95_RS05525 (MPF95_05525) minD 1148180..1148986 (-) 807 WP_245066485.1 septum site-determining protein MinD -
  MPF95_RS05530 (MPF95_05530) ilvC 1149011..1150003 (-) 993 WP_180436761.1 ketol-acid reductoisomerase -
  MPF95_RS05540 (MPF95_05540) - 1150251..1151033 (+) 783 WP_120878727.1 NAD+ synthase -
  MPF95_RS05545 (MPF95_05545) - 1151030..1151968 (+) 939 WP_245066487.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15344.88 Da        Isoelectric Point: 8.5005

>NTDB_id=667411 MPF95_RS05510 WP_245066481.1 1146737..1147141(-) (dprB) [Helicobacter pylori strain Hpfe039]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILECYCQQILKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667411 MPF95_RS05510 WP_245066481.1 1146737..1147141(-) (dprB) [Helicobacter pylori strain Hpfe039]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAGAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGTGCTATTGCCAGCAGATTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment