Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF95_RS00010 Genome accession   NZ_CP094136
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245066968.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe039     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF95_RS00005 (MPF95_00005) dnaA 1..1368 (+) 1368 WP_245066967.1 chromosomal replication initiator protein DnaA -
  MPF95_RS00010 (MPF95_00010) comH 1588..3021 (+) 1434 WP_245066968.1 competence protein Machinery gene
  MPF95_RS00020 (MPF95_00020) - 3199..3951 (+) 753 WP_000767501.1 exodeoxyribonuclease III -
  MPF95_RS00025 (MPF95_00025) - 3948..4583 (-) 636 WP_015642211.1 outer membrane protein -
  MPF95_RS00030 (MPF95_00030) - 4587..4940 (-) 354 WP_024116130.1 hypothetical protein -
  MPF95_RS00035 (MPF95_00035) recG 5022..6887 (+) 1866 WP_245066970.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54655.60 Da        Isoelectric Point: 7.2023

>NTDB_id=667400 MPF95_RS00010 WP_245066968.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe039]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSSHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPIQKPQNKPTSSQQSLQNFPYLESKLGSKNPRNSLLQPLAT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPSNTPNANINEHNESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667400 MPF95_RS00010 WP_245066968.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe039]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGTCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTAAAAGAGCCACACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACCTAGAGTCCAAACTAGGCTCTAAAAACCCTAGAAACAGCCTTTTACAGCCTTTGGCTACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAATCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAGCAACACCCCTAACGCTAATATTAACGAAC
ACAATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGTAAAAGGGCCAGAGCACGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.232

100

0.916

Multiple sequence alignment