Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG28_RS07085 Genome accession   NZ_CP094135
Coordinates   1468292..1468573 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe040     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463292..1473573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS07065 (MPG28_07065) - 1464022..1465452 (-) 1431 WP_245078102.1 COG3014 family protein -
  MPG28_RS07075 (MPG28_07075) comB4 1465664..1468027 (-) 2364 WP_245078104.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG28_RS07080 (MPG28_07080) comB3 1468029..1468292 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG28_RS07085 (MPG28_07085) comB2 1468292..1468573 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG28_RS07090 (MPG28_07090) - 1468718..1469545 (-) 828 WP_245078106.1 DUF5718 family protein -
  MPG28_RS07095 (MPG28_07095) - 1469635..1470687 (-) 1053 WP_245078108.1 MnmA/TRMU family protein -
  MPG28_RS07100 (MPG28_07100) dnaG 1470684..1472363 (-) 1680 WP_245078110.1 DNA primase -
  MPG28_RS07105 (MPG28_07105) groES 1472638..1472994 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667399 MPG28_RS07085 WP_001272686.1 1468292..1468573(-) (comB2) [Helicobacter pylori strain Hpfe040]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667399 MPG28_RS07085 WP_001272686.1 1468292..1468573(-) (comB2) [Helicobacter pylori strain Hpfe040]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment