Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG28_RS07080 | Genome accession | NZ_CP094135 |
| Coordinates | 1468029..1468292 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe040 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1463029..1473292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG28_RS07065 (MPG28_07065) | - | 1464022..1465452 (-) | 1431 | WP_245078102.1 | COG3014 family protein | - |
| MPG28_RS07075 (MPG28_07075) | comB4 | 1465664..1468027 (-) | 2364 | WP_245078104.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG28_RS07080 (MPG28_07080) | comB3 | 1468029..1468292 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG28_RS07085 (MPG28_07085) | comB2 | 1468292..1468573 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG28_RS07090 (MPG28_07090) | - | 1468718..1469545 (-) | 828 | WP_245078106.1 | DUF5718 family protein | - |
| MPG28_RS07095 (MPG28_07095) | - | 1469635..1470687 (-) | 1053 | WP_245078108.1 | MnmA/TRMU family protein | - |
| MPG28_RS07100 (MPG28_07100) | dnaG | 1470684..1472363 (-) | 1680 | WP_245078110.1 | DNA primase | - |
| MPG28_RS07105 (MPG28_07105) | groES | 1472638..1472994 (+) | 357 | WP_000671946.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667398 MPG28_RS07080 WP_000584955.1 1468029..1468292(-) (comB3) [Helicobacter pylori strain Hpfe040]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667398 MPG28_RS07080 WP_000584955.1 1468029..1468292(-) (comB3) [Helicobacter pylori strain Hpfe040]
ATGATTATCCTGTCAGCGAGTGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGTGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |