Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG28_RS06955 Genome accession   NZ_CP094135
Coordinates   1440368..1441681 (-) Length   437 a.a.
NCBI ID   WP_245078074.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe040     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435368..1446681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS06925 (MPG28_06925) nadC 1435831..1436652 (-) 822 WP_245078070.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG28_RS06930 (MPG28_06930) nadA 1436652..1437662 (-) 1011 WP_245078072.1 quinolinate synthase NadA -
  MPG28_RS06935 (MPG28_06935) - 1437649..1438455 (-) 807 WP_096396518.1 phosphatidylserine decarboxylase -
  MPG28_RS06940 (MPG28_06940) - 1438452..1438955 (-) 504 WP_000953102.1 hypothetical protein -
  MPG28_RS06945 (MPG28_06945) - 1438968..1439462 (-) 495 WP_014537179.1 hypothetical protein -
  MPG28_RS06950 (MPG28_06950) mqnP 1439455..1440339 (-) 885 WP_000913965.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG28_RS06955 (MPG28_06955) comEC/comE3 1440368..1441681 (-) 1314 WP_245078074.1 ComEC/Rec2 family competence protein Machinery gene
  MPG28_RS06960 (MPG28_06960) - 1441678..1443144 (-) 1467 WP_245078076.1 replicative DNA helicase -
  MPG28_RS06965 (MPG28_06965) - 1443155..1444549 (-) 1395 WP_245078078.1 NAD(P)H-hydrate dehydratase -
  MPG28_RS06970 (MPG28_06970) crdS 1444552..1445754 (-) 1203 WP_245079286.1 copper-sensing histidine kinase CrdS -
  MPG28_RS06975 (MPG28_06975) crdR 1445720..1446361 (-) 642 WP_064431541.1 copper response regulator transcription factor CrdR -
  MPG28_RS06980 (MPG28_06980) - 1446448..1446672 (-) 225 Protein_1355 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50054.03 Da        Isoelectric Point: 9.8918

>NTDB_id=667395 MPG28_RS06955 WP_245078074.1 1440368..1441681(-) (comEC/comE3) [Helicobacter pylori strain Hpfe040]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667395 MPG28_RS06955 WP_245078074.1 1440368..1441681(-) (comEC/comE3) [Helicobacter pylori strain Hpfe040]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAGAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGATTCCATTTAGGTATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment