Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG28_RS05420 Genome accession   NZ_CP094135
Coordinates   1129641..1130045 (-) Length   134 a.a.
NCBI ID   WP_245077631.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124641..1135045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS05380 (MPG28_05380) - 1124773..1125885 (-) 1113 WP_245077620.1 hypothetical protein -
  MPG28_RS05385 (MPG28_05385) - 1125875..1126660 (-) 786 WP_221009188.1 hypothetical protein -
  MPG28_RS05390 (MPG28_05390) - 1126660..1127046 (-) 387 WP_245077622.1 DUF1294 domain-containing protein -
  MPG28_RS05395 (MPG28_05395) - 1127377..1127538 (-) 162 WP_229765376.1 lysozyme -
  MPG28_RS05400 (MPG28_05400) - 1127604..1127939 (-) 336 WP_245077625.1 glycoside hydrolase family protein -
  MPG28_RS05405 (MPG28_05405) - 1128078..1128638 (-) 561 WP_245077627.1 hypothetical protein -
  MPG28_RS05410 (MPG28_05410) - 1128622..1128960 (-) 339 WP_015087093.1 hypothetical protein -
  MPG28_RS07660 - 1129147..1129508 (-) 362 Protein_1048 tetratricopeptide repeat protein -
  MPG28_RS05420 (MPG28_05420) dprB 1129641..1130045 (-) 405 WP_245077631.1 Holliday junction resolvase RuvX Machinery gene
  MPG28_RS05425 (MPG28_05425) dprA 1130042..1130842 (-) 801 WP_075653211.1 DNA-processing protein DprA Machinery gene
  MPG28_RS05430 (MPG28_05430) minE 1130854..1131087 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG28_RS05435 (MPG28_05435) minD 1131084..1131890 (-) 807 WP_245077634.1 septum site-determining protein MinD -
  MPG28_RS05440 (MPG28_05440) ilvC 1131915..1132907 (-) 993 WP_245077636.1 ketol-acid reductoisomerase -
  MPG28_RS05450 (MPG28_05450) - 1133156..1133938 (+) 783 WP_245077638.1 NAD+ synthase -
  MPG28_RS05455 (MPG28_05455) - 1133935..1134873 (+) 939 WP_245077640.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15285.88 Da        Isoelectric Point: 9.5583

>NTDB_id=667391 MPG28_RS05420 WP_245077631.1 1129641..1130045(-) (dprB) [Helicobacter pylori strain Hpfe040]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNKSYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667391 MPG28_RS05420 WP_245077631.1 1129641..1130045(-) (dprB) [Helicobacter pylori strain Hpfe040]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATACGGACACGAATGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGTCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment