Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG28_RS00010 Genome accession   NZ_CP094135
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245078274.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe040     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS00005 (MPG28_00005) dnaA 1..1368 (+) 1368 WP_245078272.1 chromosomal replication initiator protein DnaA -
  MPG28_RS00010 (MPG28_00010) comH 1589..3028 (+) 1440 WP_245078274.1 competence protein Machinery gene
  MPG28_RS00020 (MPG28_00020) - 3207..3959 (+) 753 WP_000767536.1 exodeoxyribonuclease III -
  MPG28_RS00025 (MPG28_00025) - 3956..4591 (-) 636 WP_121296598.1 outer membrane protein -
  MPG28_RS00030 (MPG28_00030) - 4595..4939 (-) 345 WP_245078276.1 hypothetical protein -
  MPG28_RS00035 (MPG28_00035) recG 5021..6886 (+) 1866 WP_245078278.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54900.84 Da        Isoelectric Point: 7.4338

>NTDB_id=667380 MPG28_RS00010 WP_245078274.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe040]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLVLTITHISTAIVYQSLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYSESKLGSKNPRNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNANINEHNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667380 MPG28_RS00010 WP_245078274.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe040]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATTTCCCCACACAAAAAACTCGTGCTCACTATCACCCATATATCCACTGCAATTGTCTATCAATCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCTCATCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAGAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCACGAAAAGATGGCACGACCAGGCAATGTTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGTCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.232

100

0.912

Multiple sequence alignment