Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG50_RS07255 Genome accession   NZ_CP094134
Coordinates   1518940..1519221 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe048     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513940..1524221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS07235 (MPG50_07235) - 1514651..1515991 (-) 1341 WP_245032110.1 hypothetical protein -
  MPG50_RS07245 (MPG50_07245) comB4 1516311..1518674 (-) 2364 WP_245032112.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG50_RS07250 (MPG50_07250) comB3 1518677..1518940 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG50_RS07255 (MPG50_07255) comB2 1518940..1519221 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG50_RS07260 (MPG50_07260) - 1519366..1520193 (-) 828 WP_245032114.1 DUF5718 family protein -
  MPG50_RS07265 (MPG50_07265) - 1520283..1521335 (-) 1053 WP_245032116.1 MnmA/TRMU family protein -
  MPG50_RS07270 (MPG50_07270) dnaG 1521332..1523011 (-) 1680 WP_245032118.1 DNA primase -
  MPG50_RS07275 (MPG50_07275) groES 1523288..1523644 (+) 357 WP_120813873.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667379 MPG50_RS07255 WP_001272686.1 1518940..1519221(-) (comB2) [Helicobacter pylori strain Hpfe048]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667379 MPG50_RS07255 WP_001272686.1 1518940..1519221(-) (comB2) [Helicobacter pylori strain Hpfe048]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGTGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGAAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment