Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG50_RS05450 Genome accession   NZ_CP094134
Coordinates   1140082..1140486 (-) Length   134 a.a.
NCBI ID   WP_231164688.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135082..1145486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS05410 (MPG50_05410) - 1135299..1136399 (-) 1101 WP_245031674.1 hypothetical protein -
  MPG50_RS05415 (MPG50_05415) - 1136389..1137174 (-) 786 WP_245031676.1 hypothetical protein -
  MPG50_RS05420 (MPG50_05420) - 1137174..1137560 (-) 387 WP_245017642.1 DUF1294 domain-containing protein -
  MPG50_RS05430 (MPG50_05430) - 1137896..1138516 (-) 621 WP_245031678.1 lysozyme -
  MPG50_RS05435 (MPG50_05435) - 1138527..1139087 (-) 561 WP_245031680.1 hypothetical protein -
  MPG50_RS05440 (MPG50_05440) - 1139071..1139409 (-) 339 WP_245031682.1 hypothetical protein -
  MPG50_RS05445 (MPG50_05445) - 1139594..1139956 (-) 363 WP_245031684.1 tetratricopeptide repeat protein -
  MPG50_RS05450 (MPG50_05450) dprB 1140082..1140486 (-) 405 WP_231164688.1 Holliday junction resolvase RuvX Machinery gene
  MPG50_RS05455 (MPG50_05455) dprA 1140483..1141283 (-) 801 WP_000840081.1 DNA-processing protein DprA Machinery gene
  MPG50_RS05460 (MPG50_05460) minE 1141295..1141528 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG50_RS05465 (MPG50_05465) minD 1141525..1142331 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG50_RS05470 (MPG50_05470) ilvC 1142355..1143347 (-) 993 WP_245031686.1 ketol-acid reductoisomerase -
  MPG50_RS05480 (MPG50_05480) - 1143596..1144378 (+) 783 WP_220823347.1 NAD+ synthase -
  MPG50_RS05485 (MPG50_05485) - 1144375..1145313 (+) 939 WP_245031688.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15193.68 Da        Isoelectric Point: 9.5675

>NTDB_id=667368 MPG50_RS05450 WP_231164688.1 1140082..1140486(-) (dprB) [Helicobacter pylori strain Hpfe048]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667368 MPG50_RS05450 WP_231164688.1 1140082..1140486(-) (dprB) [Helicobacter pylori strain Hpfe048]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGAGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGTTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963

Multiple sequence alignment