Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG21_RS07095 Genome accession   NZ_CP094133
Coordinates   1481253..1482566 (-) Length   437 a.a.
NCBI ID   WP_245025242.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476253..1487566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS07065 (MPG21_07065) nadC 1476716..1477537 (-) 822 WP_245025239.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG21_RS07070 (MPG21_07070) nadA 1477537..1478547 (-) 1011 WP_245025240.1 quinolinate synthase NadA -
  MPG21_RS07075 (MPG21_07075) - 1478537..1479340 (-) 804 WP_245025241.1 phosphatidylserine decarboxylase -
  MPG21_RS07080 (MPG21_07080) - 1479337..1479840 (-) 504 WP_000953102.1 hypothetical protein -
  MPG21_RS07085 (MPG21_07085) - 1479853..1480347 (-) 495 WP_057112041.1 hypothetical protein -
  MPG21_RS07090 (MPG21_07090) mqnP 1480340..1481182 (-) 843 WP_228839862.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG21_RS07095 (MPG21_07095) comEC/comE3 1481253..1482566 (-) 1314 WP_245025242.1 ComEC/Rec2 family competence protein Machinery gene
  MPG21_RS07100 (MPG21_07100) - 1482563..1484029 (-) 1467 WP_245025243.1 replicative DNA helicase -
  MPG21_RS07105 (MPG21_07105) - 1484040..1485434 (-) 1395 WP_245025245.1 NAD(P)H-hydrate dehydratase -
  MPG21_RS07110 (MPG21_07110) crdS 1485437..1486639 (-) 1203 WP_245026097.1 copper-sensing histidine kinase CrdS -
  MPG21_RS07115 (MPG21_07115) crdR 1486605..1487246 (-) 642 WP_245025247.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50097.11 Da        Isoelectric Point: 9.9068

>NTDB_id=667352 MPG21_RS07095 WP_245025242.1 1481253..1482566(-) (comEC/comE3) [Helicobacter pylori strain Hpfe049]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLHRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHVVGLGSLLDSILNMPLMIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667352 MPG21_RS07095 WP_245025242.1 1481253..1482566(-) (comEC/comE3) [Helicobacter pylori strain Hpfe049]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGTTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGCATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTATTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGTTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTGTGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTGAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment