Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG584_RS20775 Genome accession   NZ_CP108826
Coordinates   4754357..4755337 (+) Length   326 a.a.
NCBI ID   WP_405779906.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4749357..4760337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS20755 (OG584_20785) - 4750227..4751756 (+) 1530 WP_405779900.1 MFS transporter -
  OG584_RS20760 (OG584_20790) - 4752047..4752592 (-) 546 WP_405779902.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG584_RS20765 (OG584_20795) - 4752684..4753463 (+) 780 WP_405779903.1 dioxygenase -
  OG584_RS20770 (OG584_20800) - 4753627..4754175 (-) 549 WP_405779905.1 GNAT family N-acetyltransferase -
  OG584_RS20775 (OG584_20805) rpoS 4754357..4755337 (+) 981 WP_405779906.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG584_RS20780 (OG584_20810) - 4755650..4757125 (-) 1476 WP_405784194.1 MFS transporter -
  OG584_RS20785 (OG584_20815) - 4757346..4758317 (+) 972 WP_405779908.1 helix-turn-helix transcriptional regulator -
  OG584_RS20790 (OG584_20820) - 4758585..4759331 (-) 747 WP_405779909.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36488.17 Da        Isoelectric Point: 5.0355

>NTDB_id=667352 OG584_RS20775 WP_405779906.1 4754357..4755337(+) (rpoS) [Streptomyces sp. NBC_00859]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYARQILDGSVESGAGGASRDEL
EALYAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPARVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=667352 OG584_RS20775 WP_405779906.1 4754357..4755337(+) (rpoS) [Streptomyces sp. NBC_00859]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGCGAGATCGCCGACCGCGA
CCTGGTCGGCATGTATCTCGACGAAATCGCACGTACGCCGCTGCTCGATGCCGAGAAGGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCGGCAGATTCTGGACGGTTCCGTCGAGAGTGGGGCGGGTGGGGCCTCGCGCGACGAGCTG
GAGGCGCTGTACGCCGCCGGGGAGCGCGCGAAGGACGTCTTCATCCGGTCCAACCTGAGGCTGGTCGTCGCTGTCGCCCG
CCGTTATCCGCGAGCGGGGCTTCCGCTGCTCGACCTCATCCAGGAGGGCAACGCGGGCCTGGTGCGTGCGGTCGAGAAGT
TCGACTACGCCAAGGGTTTCAAGTTCTCCACCTATGCGACGTGGTGGATCCGGCAGGCGATCACGCGTTCCATAGCCGAC
CAGTCCCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGTCGCGTCCAGCGCGAGTTCAACCG
CGAGCACGGCCGTGATCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACACCAAGCCGGCGCGCGTAAGTGACGTGCTGG
ACTGGGCCCGTGACCCGGTCAGTCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTGTCTCCCGAGCAGTCGGTGATGACGCTGCTGCGCAGCGAGGAGCTCGACGAGCTGATCGGCAGGCTCGA
TCACCGTACGGCTTCGATCATCAAGATGCGGTTCGGTATCGACGACGGCCGCGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGCTTGACGCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAAATGGCCGACGACGTG
GGCTTCGACGCAGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70, region 4 (Sigma70_r4)

(263-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.667

92.025

0.374

Multiple sequence alignment