Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG21_RS05470 Genome accession   NZ_CP094133
Coordinates   1145243..1145647 (-) Length   134 a.a.
NCBI ID   WP_245024936.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140243..1150647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS05425 (MPG21_05425) - 1140339..1141397 (-) 1059 WP_245024921.1 hypothetical protein -
  MPG21_RS05430 (MPG21_05430) - 1141387..1142172 (-) 786 WP_245024923.1 hypothetical protein -
  MPG21_RS05435 (MPG21_05435) - 1142172..1142560 (-) 389 Protein_1066 DUF1294 domain-containing protein -
  MPG21_RS05440 (MPG21_05440) - 1142711..1142887 (-) 177 WP_245024925.1 hypothetical protein -
  MPG21_RS05445 (MPG21_05445) - 1142899..1143060 (-) 162 WP_245024927.1 lysozyme -
  MPG21_RS05450 (MPG21_05450) - 1143080..1143580 (-) 501 WP_245024929.1 glycoside hydrolase family protein -
  MPG21_RS05455 (MPG21_05455) - 1143591..1144151 (-) 561 WP_245024931.1 hypothetical protein -
  MPG21_RS05460 (MPG21_05460) - 1144135..1144473 (-) 339 WP_000699920.1 hypothetical protein -
  MPG21_RS05465 (MPG21_05465) - 1144658..1145113 (-) 456 WP_245024934.1 tetratricopeptide repeat protein -
  MPG21_RS05470 (MPG21_05470) dprB 1145243..1145647 (-) 405 WP_245024936.1 Holliday junction resolvase RuvX Machinery gene
  MPG21_RS05475 (MPG21_05475) dprA 1145644..1146444 (-) 801 WP_245024938.1 DNA-processing protein DprA Machinery gene
  MPG21_RS05480 (MPG21_05480) minE 1146456..1146689 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG21_RS05485 (MPG21_05485) minD 1146686..1147492 (-) 807 WP_075668161.1 septum site-determining protein MinD -
  MPG21_RS05490 (MPG21_05490) ilvC 1147517..1148509 (-) 993 WP_245024940.1 ketol-acid reductoisomerase -
  MPG21_RS05500 (MPG21_05500) - 1148758..1149540 (+) 783 WP_154481313.1 NAD+ synthase -
  MPG21_RS05505 (MPG21_05505) - 1149537..1150475 (+) 939 WP_245024942.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15254.75 Da        Isoelectric Point: 8.5076

>NTDB_id=667348 MPG21_RS05470 WP_245024936.1 1145243..1145647(-) (dprB) [Helicobacter pylori strain Hpfe049]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFTNEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667348 MPG21_RS05470 WP_245024936.1 1145243..1145647(-) (dprB) [Helicobacter pylori strain Hpfe049]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGTTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGATACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTACCAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment