Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG21_RS00010 Genome accession   NZ_CP094133
Coordinates   1588..3027 (+) Length   479 a.a.
NCBI ID   WP_245025355.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS00005 (MPG21_00005) dnaA 1..1368 (+) 1368 WP_245025354.1 chromosomal replication initiator protein DnaA -
  MPG21_RS00010 (MPG21_00010) comH 1588..3027 (+) 1440 WP_245025355.1 competence protein Machinery gene
  MPG21_RS00020 (MPG21_00020) - 3205..3957 (+) 753 WP_000767566.1 exodeoxyribonuclease III -
  MPG21_RS00025 (MPG21_00025) - 3954..4589 (-) 636 WP_033122168.1 outer membrane protein -
  MPG21_RS00030 (MPG21_00030) - 4593..4946 (-) 354 WP_245025356.1 hypothetical protein -
  MPG21_RS00035 (MPG21_00035) recG 5028..6893 (+) 1866 WP_245025357.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54907.80 Da        Isoelectric Point: 6.8744

>NTDB_id=667336 MPG21_RS00010 WP_245025355.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe049]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPLLRHSSEDQENNLFVAPPTEKMLPNNTPNADTNEHNENNENRDSVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667336 MPG21_RS00010 WP_245025355.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe049]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAACCACACCAACACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCAC
AACAATCTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCTTTTAAGGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAATGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACAATGAAAACAATGAGAATAGGGATAGTGTGGAAAAACAAACCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAACGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCCTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.914

Multiple sequence alignment