Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG57_RS07115 Genome accession   NZ_CP094132
Coordinates   1482516..1483829 (-) Length   437 a.a.
NCBI ID   WP_245080978.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477516..1488829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS07085 (MPG57_07085) nadC 1477979..1478800 (-) 822 WP_245080972.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG57_RS07090 (MPG57_07090) nadA 1478800..1479810 (-) 1011 WP_245080973.1 quinolinate synthase NadA -
  MPG57_RS07095 (MPG57_07095) - 1479800..1480603 (-) 804 WP_245080974.1 phosphatidylserine decarboxylase -
  MPG57_RS07100 (MPG57_07100) - 1480600..1481103 (-) 504 WP_245080975.1 helix-turn-helix domain-containing protein -
  MPG57_RS07105 (MPG57_07105) - 1481116..1481610 (-) 495 WP_017284228.1 hypothetical protein -
  MPG57_RS07110 (MPG57_07110) mqnP 1481603..1482445 (-) 843 WP_245080976.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG57_RS07115 (MPG57_07115) comEC/comE3 1482516..1483829 (-) 1314 WP_245080978.1 ComEC/Rec2 family competence protein Machinery gene
  MPG57_RS07120 (MPG57_07120) - 1483826..1485286 (-) 1461 WP_096524188.1 replicative DNA helicase -
  MPG57_RS07125 (MPG57_07125) - 1485298..1486692 (-) 1395 WP_245080980.1 NAD(P)H-hydrate dehydratase -
  MPG57_RS07130 (MPG57_07130) crdS 1486695..1487897 (-) 1203 WP_245081844.1 copper-sensing histidine kinase CrdS -
  MPG57_RS07135 (MPG57_07135) crdR 1487863..1488504 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50205.22 Da        Isoelectric Point: 9.9128

>NTDB_id=667331 MPG57_RS07115 WP_245080978.1 1482516..1483829(-) (comEC/comE3) [Helicobacter pylori strain Hpfe051]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLMRKQDFKSHWRRFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGVNHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667331 MPG57_RS07115 WP_245080978.1 1482516..1483829(-) (comEC/comE3) [Helicobacter pylori strain Hpfe051]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACAAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAATGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGTTAGGGGTCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTCTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTTCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment