Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG57_RS05635 Genome accession   NZ_CP094132
Coordinates   1179080..1179484 (-) Length   134 a.a.
NCBI ID   WP_180438705.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1174080..1184484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS05585 (MPG57_05585) - 1174251..1175321 (-) 1071 WP_245080574.1 hypothetical protein -
  MPG57_RS05590 (MPG57_05590) - 1175311..1176096 (-) 786 WP_180400608.1 hypothetical protein -
  MPG57_RS05595 (MPG57_05595) - 1176102..1176488 (-) 387 WP_180661123.1 DUF1294 domain-containing protein -
  MPG57_RS05600 (MPG57_05600) - 1176639..1176812 (-) 174 WP_180392247.1 hypothetical protein -
  MPG57_RS05605 (MPG57_05605) - 1176824..1176985 (-) 162 WP_245080577.1 lysozyme -
  MPG57_RS05610 (MPG57_05610) - 1177005..1177151 (-) 147 WP_245080583.1 hypothetical protein -
  MPG57_RS05615 (MPG57_05615) - 1177175..1177504 (-) 330 WP_231172284.1 lysozyme -
  MPG57_RS05620 (MPG57_05620) - 1177515..1178075 (-) 561 WP_245080585.1 hypothetical protein -
  MPG57_RS05625 (MPG57_05625) - 1178059..1178397 (-) 339 WP_000699916.1 hypothetical protein -
  MPG57_RS05630 (MPG57_05630) - 1178587..1178949 (-) 363 WP_245080587.1 tetratricopeptide repeat protein -
  MPG57_RS05635 (MPG57_05635) dprB 1179080..1179484 (-) 405 WP_180438705.1 Holliday junction resolvase RuvX Machinery gene
  MPG57_RS05640 (MPG57_05640) dprA 1179481..1180281 (-) 801 WP_245080608.1 DNA-processing protein DprA Machinery gene
  MPG57_RS05645 (MPG57_05645) minE 1180293..1180526 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG57_RS05650 (MPG57_05650) minD 1180523..1181329 (-) 807 WP_064431940.1 septum site-determining protein MinD -
  MPG57_RS05655 (MPG57_05655) ilvC 1181354..1182346 (-) 993 WP_120878730.1 ketol-acid reductoisomerase -
  MPG57_RS05665 (MPG57_05665) - 1182594..1183376 (+) 783 WP_245080611.1 NAD+ synthase -
  MPG57_RS05670 (MPG57_05670) - 1183373..1184311 (+) 939 WP_245080616.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15179.70 Da        Isoelectric Point: 9.5498

>NTDB_id=667327 MPG57_RS05635 WP_180438705.1 1179080..1179484(-) (dprB) [Helicobacter pylori strain Hpfe051]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667327 MPG57_RS05635 WP_180438705.1 1179080..1179484(-) (dprB) [Helicobacter pylori strain Hpfe051]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCACTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment