Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG57_RS00010 Genome accession   NZ_CP094132
Coordinates   1590..3026 (+) Length   478 a.a.
NCBI ID   WP_245081095.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS00005 (MPG57_00005) dnaA 1..1368 (+) 1368 WP_245081093.1 chromosomal replication initiator protein DnaA -
  MPG57_RS00010 (MPG57_00010) comH 1590..3026 (+) 1437 WP_245081095.1 competence protein Machinery gene
  MPG57_RS00020 (MPG57_00020) - 3204..3956 (+) 753 WP_096521420.1 exodeoxyribonuclease III -
  MPG57_RS00025 (MPG57_00025) - 3953..4588 (-) 636 WP_245081096.1 outer membrane protein -
  MPG57_RS00030 (MPG57_00030) - 4592..4954 (-) 363 WP_245081097.1 hypothetical protein -
  MPG57_RS00035 (MPG57_00035) recG 5036..6901 (+) 1866 WP_245081098.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54758.71 Da        Isoelectric Point: 7.1641

>NTDB_id=667316 MPG57_RS00010 WP_245081095.1 1590..3026(+) (comH) [Helicobacter pylori strain Hpfe051]
MKKPFVCLSFFLTFSNLLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLD
EKLSLETTLNPNRPTIPKNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSLQNFPYSESKLGSKNPKNSLLQPLT
TPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADINEHNESNENRDNVEKQAIRDPNIKEFAC
GKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTESLEEPQTFEAKNNFTILQARS
STEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEVKQNELN
LNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=667316 MPG57_RS00010 WP_245081095.1 1590..3026(+) (comH) [Helicobacter pylori strain Hpfe051]
ATGAAAAAACCCTTTGTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCTTCTTCAAGCCCTTGTGATCGAGCTTTTAGA
AGAAATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGGCAAGTTTTAGGCG
TTTATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGAT
GAAAAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAAAAACACCCAAATTGTTTTTTCTTCAAA
AGAATTGAAAGAGTCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGC
AATCTCTTCAAAACTTTCCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAACC
ACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCTCCTTTAAAGCATTCTTCAGA
AGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATG
AACACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATCAAAGAATTTGCGTGC
GGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGAC
TGCAACAGACATTACCCCCTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCT
CTGTTCATAAAACAGAGTCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCTAGAAGC
TCTACAGAAAAATGTAAAAGAGCCAGAGCACGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAA
ACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAACGCCCCAAACAAGACGATCAAA
CAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAAT
TTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATA
CAAAGAATGGGTTAAAAACCATGTACGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCA
AAAGCACGCCCTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.458

100

0.918

Multiple sequence alignment