Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG584_RS03920 Genome accession   NZ_CP108826
Coordinates   940170..941204 (+) Length   344 a.a.
NCBI ID   WP_405774982.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935170..946204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS03910 (OG584_03895) - 936716..938353 (-) 1638 WP_405774978.1 ABC-F family ATP-binding cassette domain-containing protein -
  OG584_RS03915 (OG584_03900) - 938542..940032 (+) 1491 WP_405774980.1 M1 family metallopeptidase -
  OG584_RS03920 (OG584_03905) cytR 940170..941204 (+) 1035 WP_405774982.1 LacI family DNA-binding transcriptional regulator Regulator
  OG584_RS03925 (OG584_03910) - 941167..942084 (-) 918 WP_405774984.1 oxygenase MpaB family protein -
  OG584_RS03930 (OG584_03915) sph 942309..943301 (+) 993 WP_405774986.1 sphingomyelin phosphodiesterase -
  OG584_RS03935 (OG584_03920) - 943405..944172 (+) 768 WP_405774988.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36837.82 Da        Isoelectric Point: 5.5885

>NTDB_id=667311 OG584_RS03920 WP_405774982.1 940170..941204(+) (cytR) [Streptomyces sp. NBC_00859]
MPDPIHRSRPTLEAVAARAGVSRATASRVVNGGAGVRPPLVDRVQQAVDELGYVPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGSGDYDRIGRYLAGGHVDGALAFSLHTEDPLPAVIHRAGLPTVFGGRPV
WAGPESGLALPYADCDNRGGARTAVQHLVAMGREHIAHIAGPQDQTSGIDRLDGYRDVLLDVDPTLTEQGAFTVESGAAA
MTALLERRPEVDAVFAANDLMASGALQALREHGRRVPDDVAVVGFDDMEKVAECTDPPLTTIRQDIEGMGRLMVRMLVRG
LDLRSVTPPDSVIMPTDLVRRASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=667311 OG584_RS03920 WP_405774982.1 940170..941204(+) (cytR) [Streptomyces sp. NBC_00859]
TTGCCCGATCCGATCCACCGCTCCCGGCCGACCCTGGAGGCCGTCGCAGCCCGCGCGGGCGTGTCGCGGGCGACGGCCTC
GCGTGTCGTCAACGGAGGCGCCGGTGTGCGGCCGCCGCTGGTGGACCGGGTCCAGCAGGCCGTCGACGAGCTCGGTTACG
TACCCAACCACGCGGCCAGGACGCTGGTGACCCGGCGCAACGGAGCCGTCGCTGTGATCATCGCGGAGCCGGAGATCCGG
ATCTTCTCGGACCCTTTCTTCTCCCAGCAGTTGCGCGGGATCAGCCGTGAGCTGACGGCCCACGACTCGCAGTTGGTGCT
GCTCCTGGTGGAGGGCAGCGGGGACTACGACCGGATCGGGCGCTATCTGGCGGGCGGCCATGTGGACGGGGCGCTGGCTT
TCTCGCTGCACACCGAGGACCCGCTGCCCGCCGTGATCCACCGGGCCGGGCTCCCCACGGTCTTCGGCGGCCGCCCGGTG
TGGGCGGGCCCGGAGTCCGGCCTGGCGCTGCCCTACGCCGACTGCGACAACCGCGGCGGCGCCCGTACGGCCGTCCAGCA
TCTCGTCGCGATGGGGCGCGAGCACATCGCGCACATCGCCGGACCGCAGGACCAGACCTCGGGGATCGACCGGCTGGACG
GCTACCGGGACGTGCTCCTCGACGTCGATCCCACGCTCACCGAACAGGGGGCGTTCACGGTGGAGAGCGGCGCGGCGGCG
ATGACCGCGCTCCTGGAGCGGCGGCCGGAGGTGGACGCCGTGTTCGCGGCCAACGACCTGATGGCGTCGGGGGCGCTCCA
GGCCCTTCGGGAACATGGCAGGAGGGTCCCCGACGATGTGGCGGTCGTGGGTTTCGACGACATGGAGAAGGTCGCCGAGT
GCACCGACCCCCCTCTGACGACGATCCGTCAGGACATCGAGGGCATGGGCCGGTTGATGGTCCGGATGCTGGTACGCGGC
CTCGACCTGCGGAGTGTCACACCACCCGACTCCGTGATCATGCCGACGGATCTGGTCCGCCGGGCCTCCGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.994

100

0.372

Multiple sequence alignment