Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG30_RS06855 Genome accession   NZ_CP094131
Coordinates   1435402..1436715 (-) Length   437 a.a.
NCBI ID   WP_245047620.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430402..1441715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS06825 (MPG30_06825) nadC 1430865..1431686 (-) 822 WP_245047612.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG30_RS06830 (MPG30_06830) nadA 1431686..1432696 (-) 1011 WP_245047614.1 quinolinate synthase NadA -
  MPG30_RS06835 (MPG30_06835) - 1432683..1433489 (-) 807 WP_245047615.1 phosphatidylserine decarboxylase -
  MPG30_RS06840 (MPG30_06840) - 1433486..1433989 (-) 504 WP_000953083.1 hypothetical protein -
  MPG30_RS06845 (MPG30_06845) - 1434002..1434496 (-) 495 WP_245047617.1 hypothetical protein -
  MPG30_RS06850 (MPG30_06850) mqnP 1434489..1435331 (-) 843 WP_245047618.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG30_RS06855 (MPG30_06855) comEC/comE3 1435402..1436715 (-) 1314 WP_245047620.1 ComEC/Rec2 family competence protein Machinery gene
  MPG30_RS06860 (MPG30_06860) - 1436712..1438178 (-) 1467 WP_245047621.1 replicative DNA helicase -
  MPG30_RS06865 (MPG30_06865) - 1438189..1439583 (-) 1395 WP_245047623.1 NAD(P)H-hydrate dehydratase -
  MPG30_RS06870 (MPG30_06870) crdS 1439586..1440788 (-) 1203 WP_245048405.1 copper-sensing histidine kinase CrdS -
  MPG30_RS06875 (MPG30_06875) crdR 1440754..1441395 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50066.99 Da        Isoelectric Point: 9.8861

>NTDB_id=667311 MPG30_RS06855 WP_245047620.1 1435402..1436715(-) (comEC/comE3) [Helicobacter pylori strain Hpfe052]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYSKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRNRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLAIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667311 MPG30_RS06855 WP_245047620.1 1435402..1436715(-) (comEC/comE3) [Helicobacter pylori strain Hpfe052]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACTCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGCTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAAATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGAGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCAATCTCTTCGCCCTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment