Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG30_RS05390 Genome accession   NZ_CP094131
Coordinates   1135177..1135581 (-) Length   134 a.a.
NCBI ID   WP_245047302.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130177..1140581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS05350 (MPG30_05350) - 1130341..1131426 (-) 1086 WP_245047288.1 hypothetical protein -
  MPG30_RS05355 (MPG30_05355) - 1131416..1132201 (-) 786 WP_245047290.1 hypothetical protein -
  MPG30_RS05360 (MPG30_05360) - 1132207..1132588 (-) 382 Protein_1043 DUF1294 domain-containing protein -
  MPG30_RS05365 (MPG30_05365) - 1132924..1133085 (-) 162 WP_245047292.1 lysozyme -
  MPG30_RS05370 (MPG30_05370) - 1133105..1133599 (-) 495 WP_245047300.1 lysozyme -
  MPG30_RS05375 (MPG30_05375) - 1133610..1134170 (-) 561 WP_096423741.1 hypothetical protein -
  MPG30_RS05380 (MPG30_05380) - 1134154..1134492 (-) 339 WP_000699916.1 hypothetical protein -
  MPG30_RS05385 (MPG30_05385) - 1134682..1135004 (-) 323 Protein_1048 tetratricopeptide repeat protein -
  MPG30_RS05390 (MPG30_05390) dprB 1135177..1135581 (-) 405 WP_245047302.1 Holliday junction resolvase RuvX Machinery gene
  MPG30_RS05395 (MPG30_05395) dprA 1135578..1136378 (-) 801 WP_245047304.1 DNA-processing protein DprA Machinery gene
  MPG30_RS05400 (MPG30_05400) minE 1136390..1136623 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG30_RS05405 (MPG30_05405) minD 1136620..1137426 (-) 807 WP_245047306.1 septum site-determining protein MinD -
  MPG30_RS05410 (MPG30_05410) ilvC 1137451..1138443 (-) 993 WP_245047308.1 ketol-acid reductoisomerase -
  MPG30_RS05420 (MPG30_05420) - 1138692..1139474 (+) 783 WP_245047310.1 NAD+ synthase -
  MPG30_RS05425 (MPG30_05425) - 1139471..1140409 (+) 939 WP_245047312.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15154.72 Da        Isoelectric Point: 9.1968

>NTDB_id=667307 MPG30_RS05390 WP_245047302.1 1135177..1135581(-) (dprB) [Helicobacter pylori strain Hpfe052]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGG
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667307 MPG30_RS05390 WP_245047302.1 1135177..1135581(-) (dprB) [Helicobacter pylori strain Hpfe052]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGGA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGTCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment