Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG30_RS00010 Genome accession   NZ_CP094131
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245047743.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS00005 (MPG30_00005) dnaA 1..1368 (+) 1368 WP_024116871.1 chromosomal replication initiator protein DnaA -
  MPG30_RS00010 (MPG30_00010) comH 1589..3022 (+) 1434 WP_245047743.1 competence protein Machinery gene
  MPG30_RS00020 (MPG30_00020) - 3200..3952 (+) 753 WP_075653384.1 exodeoxyribonuclease III -
  MPG30_RS00025 (MPG30_00025) - 3949..4584 (-) 636 WP_000668030.1 outer membrane protein -
  MPG30_RS00030 (MPG30_00030) - 4588..4941 (-) 354 WP_000836998.1 hypothetical protein -
  MPG30_RS00035 (MPG30_00035) recG 5023..6888 (+) 1866 WP_245047745.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54728.67 Da        Isoelectric Point: 7.4338

>NTDB_id=667295 MPG30_RS00010 WP_245047743.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe052]
MKKTLCLSFFLTFSNPLQALMIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNANVNEHNESNENRDNGEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNHFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEITRNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667295 MPG30_RS00010 WP_245047743.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe052]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTATGATCGAACTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTAAAAGAGCCACACCAAATGCCTTCCTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAACACCACCCACCGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATGTTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCCATTAGAGATCCTAATATCAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAAACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACCATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAACGCCCCAAACAAGACGATCAAACAG
AGCCAACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.649

100

0.92

Multiple sequence alignment