Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG239_RS30780 Genome accession   NZ_CP108814
Coordinates   6385269..6386060 (-) Length   263 a.a.
NCBI ID   WP_215016496.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00868     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6380269..6391060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG239_RS30765 (OG239_30740) - 6380495..6381193 (+) 699 WP_328928015.1 GNAT family N-acetyltransferase -
  OG239_RS30770 (OG239_30745) - 6381291..6383171 (+) 1881 WP_405678213.1 IucA/IucC family protein -
  OG239_RS30775 (OG239_30750) - 6383224..6385194 (+) 1971 WP_328928016.1 ATP-dependent DNA helicase -
  OG239_RS30780 (OG239_30755) dinR/lexA 6385269..6386060 (-) 792 WP_215016496.1 transcriptional repressor LexA Regulator
  OG239_RS30785 (OG239_30760) nrdR 6386529..6387041 (+) 513 WP_328928017.1 transcriptional regulator NrdR -
  OG239_RS30790 (OG239_30765) - 6387181..6390066 (+) 2886 WP_405678210.1 vitamin B12-dependent ribonucleotide reductase -
  OG239_RS30795 (OG239_30770) - 6390208..6391038 (+) 831 WP_405678208.1 arylamine N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28547.32 Da        Isoelectric Point: 7.4240

>NTDB_id=667289 OG239_RS30780 WP_215016496.1 6385269..6386060(-) (dinR/lexA) [Streptomyces sp. NBC_00868]
MTTTADSATITAQNRSQSRLEPVHAMNDANLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNS
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=667289 OG239_RS30780 WP_215016496.1 6385269..6386060(-) (dinR/lexA) [Streptomyces sp. NBC_00868]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCCGGTCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAAGTCATTCGCGACTCGGTGCAGCGGCGGGGTTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCCTCGGTCGCGCACCAGCTGATGGCGCTGGAGCGGAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTATGAGGTACGGGGCTCGGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCTTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAAGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGTCGCCAGCCGGTCGCGGAGAATGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTCCCGCACAACTCC
GCCTACCAGCCGATCCCCGGTGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376

Multiple sequence alignment