Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPF99_RS03995 | Genome accession | NZ_CP094130 |
| Coordinates | 821439..821702 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe053 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 816439..826702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF99_RS03970 (MPF99_03970) | groES | 816736..817092 (-) | 357 | WP_245058088.1 | co-chaperone GroES | - |
| MPF99_RS03975 (MPF99_03975) | dnaG | 817367..819046 (+) | 1680 | WP_245058090.1 | DNA primase | - |
| MPF99_RS03980 (MPF99_03980) | - | 819043..820095 (+) | 1053 | WP_245058092.1 | MnmA/TRMU family protein | - |
| MPF99_RS03985 (MPF99_03985) | - | 820186..821013 (+) | 828 | WP_245058094.1 | DUF5718 family protein | - |
| MPF99_RS03990 (MPF99_03990) | comB2 | 821158..821439 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPF99_RS03995 (MPF99_03995) | comB3 | 821439..821702 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPF99_RS04000 (MPF99_04000) | comB4 | 821705..824068 (+) | 2364 | WP_245058096.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPF99_RS04010 (MPF99_04010) | - | 824369..825709 (+) | 1341 | WP_021306482.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667286 MPF99_RS03995 WP_000584955.1 821439..821702(+) (comB3) [Helicobacter pylori strain Hpfe053]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667286 MPF99_RS03995 WP_000584955.1 821439..821702(+) (comB3) [Helicobacter pylori strain Hpfe053]
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |