Detailed information NTG0667280

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPF99_RS02820
• Genome accession: NZ_CP094130
• Coordinates: 580354..581553 (-)
• Length: 399 a.a.
• NCBI ID: WP_180434270.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe053
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 575354..586553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF99_RS02795 (MPF99_02795)	-	575377..575895 (-)	519	WP_180595755.1	replication regulatory RepB family protein	-
MPF99_RS02800 (MPF99_02800)	-	575892..576836 (-)	945	WP_096397346.1	CpaF/VirB11 family protein	-
MPF99_RS02805 (MPF99_02805)	-	576841..577113 (-)	273	WP_000883379.1	hypothetical protein	-
MPF99_RS02810 (MPF99_02810)	-	577131..578108 (-)	978	WP_245059339.1	hypothetical protein	-
MPF99_RS02815 (MPF99_02815)	-	578121..580370 (-)	2250	WP_245059340.1	collagen-like protein	-
MPF99_RS02820 (MPF99_02820)	comB10	580354..581553 (-)	1200	WP_180434270.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF99_RS02825 (MPF99_02825)	-	581550..583171 (-)	1622	Protein_548	TrbG/VirB9 family P-type conjugative transfer protein	-
MPF99_RS02830 (MPF99_02830)	-	583168..584339 (-)	1172	Protein_549	VirB8/TrbF family protein	-
MPF99_RS02835 (MPF99_02835)	-	584332..584466 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44595.27 Da
• Isoelectric Point: 9.9651

>NTDB_id=667280 MPF99_RS02820 WP_180434270.1 580354..581553(-) (comB10) [Helicobacter pylori strain Hpfe053]
MNKSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=667280 MPF99_RS02820 WP_180434270.1 580354..581553(-) (comB10) [Helicobacter pylori strain Hpfe053]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGTATGGGGATTAACCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.266	99.749	0.531