Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG85_RS07060 Genome accession   NZ_CP094129
Coordinates   1468452..1468733 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe054     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463452..1473733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS07040 (MPG85_07040) - 1464162..1465592 (-) 1431 WP_180416419.1 COG3014 family protein -
  MPG85_RS07050 (MPG85_07050) comB4 1465824..1468187 (-) 2364 WP_245050553.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG85_RS07055 (MPG85_07055) comB3 1468189..1468452 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG85_RS07060 (MPG85_07060) comB2 1468452..1468733 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG85_RS07065 (MPG85_07065) - 1468878..1469705 (-) 828 WP_245050555.1 DUF5718 family protein -
  MPG85_RS07070 (MPG85_07070) - 1469797..1470849 (-) 1053 WP_220943493.1 MnmA/TRMU family protein -
  MPG85_RS07075 (MPG85_07075) dnaG 1470846..1472525 (-) 1680 WP_245050557.1 DNA primase -
  MPG85_RS07080 (MPG85_07080) groES 1472799..1473155 (+) 357 WP_212778432.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667271 MPG85_RS07060 WP_001272686.1 1468452..1468733(-) (comB2) [Helicobacter pylori strain Hpfe054]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667271 MPG85_RS07060 WP_001272686.1 1468452..1468733(-) (comB2) [Helicobacter pylori strain Hpfe054]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGTGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCTCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment