Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG85_RS06930 Genome accession   NZ_CP094129
Coordinates   1440572..1441885 (-) Length   437 a.a.
NCBI ID   WP_245050526.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435572..1446885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS06900 (MPG85_06900) nadC 1436035..1436856 (-) 822 WP_245050519.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG85_RS06905 (MPG85_06905) nadA 1436856..1437866 (-) 1011 WP_245050521.1 quinolinate synthase NadA -
  MPG85_RS06910 (MPG85_06910) - 1437856..1438659 (-) 804 WP_245050524.1 phosphatidylserine decarboxylase -
  MPG85_RS06915 (MPG85_06915) - 1438653..1439159 (-) 507 WP_154403895.1 helix-turn-helix domain-containing protein -
  MPG85_RS06920 (MPG85_06920) - 1439172..1439666 (-) 495 WP_180591492.1 hypothetical protein -
  MPG85_RS06925 (MPG85_06925) mqnP 1439659..1440543 (-) 885 WP_024422554.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG85_RS06930 (MPG85_06930) comEC/comE3 1440572..1441885 (-) 1314 WP_245050526.1 ComEC/Rec2 family competence protein Machinery gene
  MPG85_RS06935 (MPG85_06935) - 1441882..1443342 (-) 1461 WP_245050528.1 replicative DNA helicase -
  MPG85_RS06940 (MPG85_06940) - 1443353..1444747 (-) 1395 WP_245050531.1 NAD(P)H-hydrate dehydratase -
  MPG85_RS06945 (MPG85_06945) crdS 1444750..1445952 (-) 1203 WP_245051548.1 copper-sensing histidine kinase CrdS -
  MPG85_RS06950 (MPG85_06950) crdR 1445918..1446559 (-) 642 WP_245050533.1 copper response regulator transcription factor CrdR -
  MPG85_RS06955 (MPG85_06955) - 1446645..1446869 (-) 225 Protein_1357 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50175.02 Da        Isoelectric Point: 9.8515

>NTDB_id=667267 MPG85_RS06930 WP_245050526.1 1440572..1441885(-) (comEC/comE3) [Helicobacter pylori strain Hpfe054]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGLI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKNSSFLVRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLWSLLDSILNMPLTIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYVSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667267 MPG85_RS06930 WP_245050526.1 1440572..1441885(-) (comEC/comE3) [Helicobacter pylori strain Hpfe054]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCTTGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGTACCCATTCAAACGCCTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAATGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAAACTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGTGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATGTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936

Multiple sequence alignment