Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG85_RS05430 Genome accession   NZ_CP094129
Coordinates   1129981..1130385 (-) Length   134 a.a.
NCBI ID   WP_245050219.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124981..1135385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS05390 (MPG85_05390) - 1125131..1126249 (-) 1119 WP_245050214.1 hypothetical protein -
  MPG85_RS05395 (MPG85_05395) - 1126239..1127024 (-) 786 WP_245050215.1 hypothetical protein -
  MPG85_RS05400 (MPG85_05400) - 1127024..1127410 (-) 387 WP_245050216.1 DUF1294 domain-containing protein -
  MPG85_RS05405 (MPG85_05405) - 1127735..1127896 (-) 162 WP_014536434.1 lysozyme -
  MPG85_RS05410 (MPG85_05410) - 1127916..1128410 (-) 495 WP_245050217.1 lysozyme -
  MPG85_RS05415 (MPG85_05415) - 1128421..1128981 (-) 561 WP_245050218.1 hypothetical protein -
  MPG85_RS05420 (MPG85_05420) - 1128965..1129303 (-) 339 WP_180406804.1 hypothetical protein -
  MPG85_RS05425 (MPG85_05425) - 1129494..1129850 (-) 357 WP_245020220.1 tetratricopeptide repeat protein -
  MPG85_RS05430 (MPG85_05430) dprB 1129981..1130385 (-) 405 WP_245050219.1 Holliday junction resolvase RuvX Machinery gene
  MPG85_RS05435 (MPG85_05435) dprA 1130382..1131182 (-) 801 WP_245050220.1 DNA-processing protein DprA Machinery gene
  MPG85_RS05440 (MPG85_05440) minE 1131194..1131427 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG85_RS05445 (MPG85_05445) minD 1131424..1132230 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG85_RS05450 (MPG85_05450) ilvC 1132249..1133241 (-) 993 WP_245050221.1 ketol-acid reductoisomerase -
  MPG85_RS05460 (MPG85_05460) - 1133490..1134272 (+) 783 WP_245050223.1 NAD+ synthase -
  MPG85_RS05465 (MPG85_05465) - 1134269..1135207 (+) 939 WP_245050229.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15377.87 Da        Isoelectric Point: 9.0329

>NTDB_id=667263 MPG85_RS05430 WP_245050219.1 1129981..1130385(-) (dprB) [Helicobacter pylori strain Hpfe054]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667263 MPG85_RS05430 WP_245050219.1 1129981..1130385(-) (dprB) [Helicobacter pylori strain Hpfe054]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment