Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG85_RS00010 Genome accession   NZ_CP094129
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_245050674.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS00005 (MPG85_00005) dnaA 1..1368 (+) 1368 WP_245050671.1 chromosomal replication initiator protein DnaA -
  MPG85_RS00010 (MPG85_00010) comH 1590..3023 (+) 1434 WP_245050674.1 competence protein Machinery gene
  MPG85_RS00020 (MPG85_00020) - 3201..3953 (+) 753 WP_060758708.1 exodeoxyribonuclease III -
  MPG85_RS00025 (MPG85_00025) - 3950..4585 (-) 636 WP_033122168.1 outer membrane protein -
  MPG85_RS00030 (MPG85_00030) - 4589..4942 (-) 354 WP_245050676.1 hypothetical protein -
  MPG85_RS00035 (MPG85_00035) recG 5024..6889 (+) 1866 WP_245050678.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54798.65 Da        Isoelectric Point: 6.7223

>NTDB_id=667251 MPG85_RS00010 WP_245050674.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe054]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KPSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYTEFKLDSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADINEHHESNENKDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667251 MPG85_RS00010 WP_245050674.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe054]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCATATATCTACTGCAATTGTCTATCAACCCCTTGATGAA
AAACCTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACACAGAGTTCAAACTAGACTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACCATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATTTAATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACTAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCCTTGAGTATTGAAAACTCTCGTGTTGTATGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.929

Multiple sequence alignment