Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG06_RS07235 Genome accession   NZ_CP094126
Coordinates   1513660..1514973 (-) Length   437 a.a.
NCBI ID   WP_245057664.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508660..1519973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS07205 (MPG06_07205) nadC 1509123..1509944 (-) 822 WP_245057661.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG06_RS07210 (MPG06_07210) nadA 1509944..1510954 (-) 1011 WP_120918311.1 quinolinate synthase NadA -
  MPG06_RS07215 (MPG06_07215) - 1510941..1511747 (-) 807 WP_245057663.1 phosphatidylserine decarboxylase -
  MPG06_RS07220 (MPG06_07220) - 1511744..1512247 (-) 504 WP_000953083.1 hypothetical protein -
  MPG06_RS07225 (MPG06_07225) - 1512260..1512754 (-) 495 WP_001867294.1 hypothetical protein -
  MPG06_RS07230 (MPG06_07230) mqnP 1512747..1513631 (-) 885 WP_212864940.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG06_RS07235 (MPG06_07235) comEC/comE3 1513660..1514973 (-) 1314 WP_245057664.1 ComEC/Rec2 family competence protein Machinery gene
  MPG06_RS07240 (MPG06_07240) - 1514970..1516430 (-) 1461 WP_245057665.1 replicative DNA helicase -
  MPG06_RS07245 (MPG06_07245) - 1516441..1517835 (-) 1395 WP_245057666.1 NAD(P)H-hydrate dehydratase -
  MPG06_RS07250 (MPG06_07250) crdS 1517838..1519040 (-) 1203 WP_245058509.1 copper-sensing histidine kinase CrdS -
  MPG06_RS07255 (MPG06_07255) crdR 1519006..1519647 (-) 642 WP_096423370.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50192.20 Da        Isoelectric Point: 9.9069

>NTDB_id=667226 MPG06_RS07235 WP_245057664.1 1513660..1514973(-) (comEC/comE3) [Helicobacter pylori strain Hpfe056]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKNQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANVLGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667226 MPG06_RS07235 WP_245057664.1 1513660..1514973(-) (comEC/comE3) [Helicobacter pylori strain Hpfe056]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAAATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAATATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGTGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGTCATAAGCTTAAGT
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTATTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCACATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954

Multiple sequence alignment