Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG06_RS05750 Genome accession   NZ_CP094126
Coordinates   1206612..1207016 (-) Length   134 a.a.
NCBI ID   WP_245057376.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201612..1212016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS05710 (MPG06_05710) - 1201722..1202858 (-) 1137 WP_245057368.1 hypothetical protein -
  MPG06_RS05715 (MPG06_05715) - 1202848..1203633 (-) 786 WP_245058477.1 hypothetical protein -
  MPG06_RS05720 (MPG06_05720) - 1203633..1204019 (-) 387 WP_245057370.1 DUF1294 domain-containing protein -
  MPG06_RS05725 (MPG06_05725) - 1204130..1204297 (-) 168 WP_231200692.1 hypothetical protein -
  MPG06_RS05730 (MPG06_05730) - 1204355..1205017 (-) 663 WP_342370408.1 glycoside hydrolase family protein -
  MPG06_RS05735 (MPG06_05735) - 1205046..1205606 (-) 561 WP_245057372.1 hypothetical protein -
  MPG06_RS05740 (MPG06_05740) - 1205599..1205928 (-) 330 WP_245057374.1 hypothetical protein -
  MPG06_RS05745 (MPG06_05745) - 1206123..1206479 (-) 357 WP_245058481.1 tetratricopeptide repeat protein -
  MPG06_RS05750 (MPG06_05750) dprB 1206612..1207016 (-) 405 WP_245057376.1 Holliday junction resolvase RuvX Machinery gene
  MPG06_RS05755 (MPG06_05755) dprA 1207013..1207813 (-) 801 WP_245057378.1 DNA-processing protein DprA Machinery gene
  MPG06_RS05760 (MPG06_05760) minE 1207825..1208058 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG06_RS05765 (MPG06_05765) minD 1208055..1208861 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG06_RS05770 (MPG06_05770) ilvC 1208880..1209872 (-) 993 WP_245057381.1 ketol-acid reductoisomerase -
  MPG06_RS05780 (MPG06_05780) - 1210121..1210903 (+) 783 WP_050851280.1 NAD+ synthase -
  MPG06_RS05785 (MPG06_05785) - 1210900..1211838 (+) 939 WP_245057383.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15252.75 Da        Isoelectric Point: 9.1725

>NTDB_id=667222 MPG06_RS05750 WP_245057376.1 1206612..1207016(-) (dprB) [Helicobacter pylori strain Hpfe056]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667222 MPG06_RS05750 WP_245057376.1 1206612..1207016(-) (dprB) [Helicobacter pylori strain Hpfe056]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGGATTGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATACGGACACGAACGCGCGCATTGAGCATTTCATTAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment