Detailed information NTG0667218

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG06_RS04440
• Genome accession: NZ_CP094126
• Coordinates: 926671..927873 (-)
• Length: 400 a.a.
• NCBI ID: WP_245057120.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe056
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 921671..932873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG06_RS04415 (MPG06_04415)	-	921757..922275 (-)	519	WP_033588775.1	hypothetical protein	-
MPG06_RS04420 (MPG06_04420)	-	922272..923216 (-)	945	WP_220888369.1	CpaF/VirB11 family protein	-
MPG06_RS04425 (MPG06_04425)	-	923221..923493 (-)	273	WP_245057116.1	hypothetical protein	-
MPG06_RS04430 (MPG06_04430)	-	923511..924488 (-)	978	WP_231211288.1	hypothetical protein	-
MPG06_RS04435 (MPG06_04435)	-	924501..926687 (-)	2187	WP_245057118.1	collagen-like protein	-
MPG06_RS04440 (MPG06_04440)	comB10	926671..927873 (-)	1203	WP_245057120.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG06_RS04445 (MPG06_04445)	-	927870..929540 (-)	1671	WP_245057123.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG06_RS04450 (MPG06_04450)	-	929543..930706 (-)	1164	WP_245057126.1	VirB8/TrbF family protein	-
MPG06_RS04455 (MPG06_04455)	-	930699..930833 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44722.42 Da
• Isoelectric Point: 9.9651

>NTDB_id=667218 MPG06_RS04440 WP_245057120.1 926671..927873(-) (comB10) [Helicobacter pylori strain Hpfe056]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=667218 MPG06_RS04440 WP_245057120.1 926671..927873(-) (comB10) [Helicobacter pylori strain Hpfe056]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTACTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.181	98.25	0.523