Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG06_RS00010 Genome accession   NZ_CP094126
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245057785.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS00005 (MPG06_00005) dnaA 1..1368 (+) 1368 WP_033586717.1 chromosomal replication initiator protein DnaA -
  MPG06_RS00010 (MPG06_00010) comH 1589..3028 (+) 1440 WP_245057785.1 competence protein Machinery gene
  MPG06_RS00020 (MPG06_00020) - 3206..3958 (+) 753 WP_245057788.1 exodeoxyribonuclease III -
  MPG06_RS00025 (MPG06_00025) - 3955..4587 (-) 633 WP_245057790.1 outer membrane protein -
  MPG06_RS00030 (MPG06_00030) - 4591..4944 (-) 354 WP_245057792.1 hypothetical protein -
  MPG06_RS00035 (MPG06_00035) recG 5026..6897 (+) 1872 WP_245057794.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54865.88 Da        Isoelectric Point: 7.4579

>NTDB_id=667208 MPG06_RS00010 WP_245057785.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe056]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYIESKLGSKNPKNSLLQPL
ATPNKINSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNANINEHHESNENRDSVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAK
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667208 MPG06_RS00010 WP_245057785.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe056]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACATAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAACTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAATCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAAA
AGCTCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.023

100

0.91

Multiple sequence alignment