Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG01_RS07140 Genome accession   NZ_CP094124
Coordinates   1482592..1482873 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe057     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477592..1487873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS07120 (MPG01_07120) - 1478303..1479733 (-) 1431 WP_245037601.1 COG3014 family protein -
  MPG01_RS07130 (MPG01_07130) comB4 1479964..1482327 (-) 2364 WP_245037602.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG01_RS07135 (MPG01_07135) comB3 1482329..1482592 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG01_RS07140 (MPG01_07140) comB2 1482592..1482873 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG01_RS07145 (MPG01_07145) - 1483018..1483845 (-) 828 WP_245037603.1 DUF5718 family protein -
  MPG01_RS07150 (MPG01_07150) - 1484147..1485199 (-) 1053 WP_221009418.1 MnmA/TRMU family protein -
  MPG01_RS07155 (MPG01_07155) dnaG 1485196..1486875 (-) 1680 WP_245037604.1 DNA primase -
  MPG01_RS07160 (MPG01_07160) groES 1487150..1487506 (+) 357 WP_096481042.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667207 MPG01_RS07140 WP_001272686.1 1482592..1482873(-) (comB2) [Helicobacter pylori strain Hpfe057]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667207 MPG01_RS07140 WP_001272686.1 1482592..1482873(-) (comB2) [Helicobacter pylori strain Hpfe057]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATTGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment