Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG01_RS07010 Genome accession   NZ_CP094124
Coordinates   1454647..1455960 (-) Length   437 a.a.
NCBI ID   WP_245037589.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe057     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449647..1460960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS06980 (MPG01_06980) nadC 1450110..1450931 (-) 822 WP_129066342.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG01_RS06985 (MPG01_06985) nadA 1450931..1451941 (-) 1011 WP_245037586.1 quinolinate synthase NadA -
  MPG01_RS06990 (MPG01_06990) - 1451931..1452734 (-) 804 WP_245037587.1 phosphatidylserine decarboxylase -
  MPG01_RS06995 (MPG01_06995) - 1452728..1453234 (-) 507 WP_154403895.1 helix-turn-helix domain-containing protein -
  MPG01_RS07000 (MPG01_07000) - 1453247..1453741 (-) 495 WP_000544981.1 hypothetical protein -
  MPG01_RS07005 (MPG01_07005) mqnP 1453734..1454618 (-) 885 WP_245037588.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG01_RS07010 (MPG01_07010) comEC/comE3 1454647..1455960 (-) 1314 WP_245037589.1 ComEC/Rec2 family competence protein Machinery gene
  MPG01_RS07015 (MPG01_07015) - 1455957..1457423 (-) 1467 WP_245037590.1 replicative DNA helicase -
  MPG01_RS07020 (MPG01_07020) - 1457434..1458828 (-) 1395 WP_245037591.1 NAD(P)H-hydrate dehydratase -
  MPG01_RS07025 (MPG01_07025) crdS 1458831..1460033 (-) 1203 WP_245038437.1 copper-sensing histidine kinase CrdS -
  MPG01_RS07030 (MPG01_07030) crdR 1459999..1460640 (-) 642 WP_089483006.1 copper response regulator transcription factor CrdR -
  MPG01_RS07035 (MPG01_07035) - 1460726..1460953 (-) 228 Protein_1377 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50066.12 Da        Isoelectric Point: 9.8515

>NTDB_id=667203 MPG01_RS07010 WP_245037589.1 1454647..1455960(-) (comEC/comE3) [Helicobacter pylori strain Hpfe057]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKLHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFWMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPAISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667203 MPG01_RS07010 WP_245037589.1 1454647..1455960(-) (comEC/comE3) [Helicobacter pylori strain Hpfe057]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAGTTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATTGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTTCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTGGATGCGATCTTTTCAGGTCATAAGCTTAAGT
GCACTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTGCGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCACATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment