Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG01_RS05525 Genome accession   NZ_CP094124
Coordinates   1153945..1154349 (-) Length   134 a.a.
NCBI ID   WP_245037321.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148945..1159349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS05480 (MPG01_05480) - 1149070..1150194 (-) 1125 WP_245037309.1 hypothetical protein -
  MPG01_RS05485 (MPG01_05485) - 1150184..1150969 (-) 786 WP_245037311.1 hypothetical protein -
  MPG01_RS05490 (MPG01_05490) - 1150969..1151355 (-) 387 WP_245037313.1 DUF1294 domain-containing protein -
  MPG01_RS05495 (MPG01_05495) - 1151516..1151683 (-) 168 WP_245038450.1 hypothetical protein -
  MPG01_RS07690 - 1151695..1151961 (-) 267 Protein_1073 lysozyme -
  MPG01_RS07695 - 1152061..1152255 (-) 195 Protein_1074 lysozyme -
  MPG01_RS05505 (MPG01_05505) - 1152385..1152942 (-) 558 WP_245037317.1 hypothetical protein -
  MPG01_RS05510 (MPG01_05510) - 1152926..1153264 (-) 339 WP_220993397.1 hypothetical protein -
  MPG01_RS05515 (MPG01_05515) - 1153439..1153624 (+) 186 WP_245037319.1 hypothetical protein -
  MPG01_RS05520 (MPG01_05520) - 1153660..1153815 (-) 156 WP_162973516.1 sel1 repeat family protein -
  MPG01_RS05525 (MPG01_05525) dprB 1153945..1154349 (-) 405 WP_245037321.1 Holliday junction resolvase RuvX Machinery gene
  MPG01_RS05530 (MPG01_05530) dprA 1154346..1155146 (-) 801 WP_245037323.1 DNA-processing protein DprA Machinery gene
  MPG01_RS05535 (MPG01_05535) minE 1155157..1155390 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG01_RS05540 (MPG01_05540) minD 1155387..1156193 (-) 807 WP_245037325.1 septum site-determining protein MinD -
  MPG01_RS05545 (MPG01_05545) ilvC 1156218..1157210 (-) 993 WP_245037327.1 ketol-acid reductoisomerase -
  MPG01_RS05555 (MPG01_05555) - 1157459..1158241 (+) 783 WP_245037329.1 NAD+ synthase -
  MPG01_RS05560 (MPG01_05560) - 1158238..1159176 (+) 939 WP_245037331.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15354.90 Da        Isoelectric Point: 8.7193

>NTDB_id=667199 MPG01_RS05525 WP_245037321.1 1153945..1154349(-) (dprB) [Helicobacter pylori strain Hpfe057]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYVDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667199 MPG01_RS05525 WP_245037321.1 1153945..1154349(-) (dprB) [Helicobacter pylori strain Hpfe057]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGTGGACACGAACGCACGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948

Multiple sequence alignment