Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG73_RS05680 Genome accession   NZ_CP094122
Coordinates   1186524..1186928 (-) Length   134 a.a.
NCBI ID   WP_245056788.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1181524..1191928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS05635 (MPG73_05635) - 1181642..1182778 (-) 1137 WP_245056780.1 hypothetical protein -
  MPG73_RS05640 (MPG73_05640) - 1182768..1183553 (-) 786 WP_245056781.1 hypothetical protein -
  MPG73_RS05645 (MPG73_05645) - 1183553..1183939 (-) 387 WP_245056782.1 DUF1294 domain-containing protein -
  MPG73_RS05650 (MPG73_05650) - 1184021..1184224 (-) 204 WP_245057921.1 hypothetical protein -
  MPG73_RS05655 (MPG73_05655) - 1184274..1184435 (-) 162 WP_017282730.1 hypothetical protein -
  MPG73_RS05660 (MPG73_05660) - 1184455..1184949 (-) 495 WP_245056783.1 lysozyme -
  MPG73_RS05665 (MPG73_05665) - 1184960..1185520 (-) 561 WP_245056785.1 hypothetical protein -
  MPG73_RS05670 (MPG73_05670) - 1185504..1185842 (-) 339 WP_000699911.1 hypothetical protein -
  MPG73_RS07975 - 1186310..1186393 (-) 84 Protein_1105 sel1 repeat family protein -
  MPG73_RS05680 (MPG73_05680) dprB 1186524..1186928 (-) 405 WP_245056788.1 Holliday junction resolvase RuvX Machinery gene
  MPG73_RS05685 (MPG73_05685) dprA 1186925..1187725 (-) 801 WP_154502027.1 DNA-processing protein DprA Machinery gene
  MPG73_RS05690 (MPG73_05690) minE 1187737..1187970 (-) 234 WP_180661111.1 cell division topological specificity factor MinE -
  MPG73_RS05695 (MPG73_05695) minD 1187967..1188773 (-) 807 WP_001019043.1 septum site-determining protein MinD -
  MPG73_RS05700 (MPG73_05700) ilvC 1188798..1189790 (-) 993 WP_245056790.1 ketol-acid reductoisomerase -
  MPG73_RS05710 (MPG73_05710) - 1190049..1190831 (+) 783 WP_245056791.1 NAD+ synthase -
  MPG73_RS05715 (MPG73_05715) - 1190828..1191766 (+) 939 WP_245056793.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15203.68 Da        Isoelectric Point: 9.1735

>NTDB_id=667177 MPG73_RS05680 WP_245056788.1 1186524..1186928(-) (dprB) [Helicobacter pylori strain Hpfe058]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQHVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667177 MPG73_RS05680 WP_245056788.1 1186524..1186928(-) (dprB) [Helicobacter pylori strain Hpfe058]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCATGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment