Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG73_RS02495 Genome accession   NZ_CP094122
Coordinates   499875..500159 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494875..505159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS02475 (MPG73_02475) - 496361..497286 (-) 926 Protein_473 hypothetical protein -
  MPG73_RS02480 (MPG73_02480) - 497394..498208 (-) 815 Protein_474 hypothetical protein -
  MPG73_RS02485 (MPG73_02485) - 498507..499295 (+) 789 WP_245057532.1 integrase -
  MPG73_RS02490 (MPG73_02490) - 499399..499878 (+) 480 WP_195836226.1 hypothetical protein -
  MPG73_RS02495 (MPG73_02495) comB2 499875..500159 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG73_RS02500 (MPG73_02500) comB3 500170..500433 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG73_RS02505 (MPG73_02505) - 500444..500680 (+) 237 WP_001183709.1 hypothetical protein -
  MPG73_RS02510 (MPG73_02510) - 500680..502407 (+) 1728 Protein_480 FtsK/SpoIIIE domain-containing protein -
  MPG73_RS02515 (MPG73_02515) - 502463..503722 (-) 1260 WP_245057044.1 transposase -
  MPG73_RS02520 (MPG73_02520) - 503697..504350 (-) 654 WP_154415739.1 IS607-like element IS607 family transposase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=667172 MPG73_RS02495 WP_000736478.1 499875..500159(+) (comB2) [Helicobacter pylori strain Hpfe058]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667172 MPG73_RS02495 WP_000736478.1 499875..500159(+) (comB2) [Helicobacter pylori strain Hpfe058]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment