Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG73_RS00010 Genome accession   NZ_CP094122
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245057065.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS00005 (MPG73_00005) dnaA 1..1368 (+) 1368 WP_180388917.1 chromosomal replication initiator protein DnaA -
  MPG73_RS00010 (MPG73_00010) comH 1589..3028 (+) 1440 WP_245057065.1 competence protein Machinery gene
  MPG73_RS00020 (MPG73_00020) - 3206..3958 (+) 753 WP_245057067.1 exodeoxyribonuclease III -
  MPG73_RS00025 (MPG73_00025) - 3955..4590 (-) 636 WP_000668030.1 outer membrane protein -
  MPG73_RS00030 (MPG73_00030) - 4594..4947 (-) 354 WP_245057069.1 hypothetical protein -
  MPG73_RS00035 (MPG73_00035) recG 5029..6894 (+) 1866 WP_245057071.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54792.69 Da        Isoelectric Point: 7.4803

>NTDB_id=667164 MPG73_RS00010 WP_245057065.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe058]
MKKTLCLSFFLTFSNPLQALVIELLEEIKASPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNASIQKPQNKPTSSQQSLQNFPYSESKLGSKNPKNSLLQPL
ATPSKLSSTNEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADTNEHHESNENRDSVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSKLAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667164 MPG73_RS00010 WP_245057065.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe058]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAGCTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCCTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCCTCACCAAATGCCTTCTTTAAACGCATCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAATTAAGCTCCACTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAGAACAACCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATATCAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAGTTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCAACTTTCTATGAAACCAGCAAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCCTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.919

Multiple sequence alignment