Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG25_RS06960 Genome accession   NZ_CP094121
Coordinates   1460320..1461633 (-) Length   437 a.a.
NCBI ID   WP_245018676.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455320..1466633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS06930 (MPG25_06930) nadC 1455783..1456604 (-) 822 WP_245018672.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG25_RS06935 (MPG25_06935) nadA 1456604..1457614 (-) 1011 WP_001141983.1 quinolinate synthase NadA -
  MPG25_RS06940 (MPG25_06940) - 1457601..1458407 (-) 807 WP_245018673.1 phosphatidylserine decarboxylase -
  MPG25_RS06945 (MPG25_06945) - 1458404..1458907 (-) 504 WP_245018674.1 helix-turn-helix domain-containing protein -
  MPG25_RS06950 (MPG25_06950) - 1458920..1459414 (-) 495 WP_015428501.1 hypothetical protein -
  MPG25_RS06955 (MPG25_06955) mqnP 1459407..1460291 (-) 885 WP_245018675.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG25_RS06960 (MPG25_06960) comEC/comE3 1460320..1461633 (-) 1314 WP_245018676.1 ComEC/Rec2 family competence protein Machinery gene
  MPG25_RS06965 (MPG25_06965) - 1461630..1463096 (-) 1467 WP_245018677.1 replicative DNA helicase -
  MPG25_RS06970 (MPG25_06970) - 1463107..1464501 (-) 1395 WP_245018678.1 NAD(P)H-hydrate dehydratase -
  MPG25_RS06975 (MPG25_06975) crdS 1464504..1465706 (-) 1203 WP_245019160.1 copper-sensing histidine kinase CrdS -
  MPG25_RS06980 (MPG25_06980) crdR 1465672..1466313 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49877.80 Da        Isoelectric Point: 9.8539

>NTDB_id=667159 MPG25_RS06960 WP_245018676.1 1460320..1461633(-) (comEC/comE3) [Helicobacter pylori strain Hpfe059]
MKDKTFQGAFELLTTPKECLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSVHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLNFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNALSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667159 MPG25_RS06960 WP_245018676.1 1460320..1461633(-) (comEC/comE3) [Helicobacter pylori strain Hpfe059]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATGCTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAGTATTTGAACTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGTTCATTCAAGCGCTTTAGCGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAAATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGCTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936

Multiple sequence alignment