Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG25_RS05465 Genome accession   NZ_CP094121
Coordinates   1156964..1157368 (-) Length   134 a.a.
NCBI ID   WP_245018518.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151964..1162368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS05425 (MPG25_05425) - 1152135..1153242 (-) 1108 Protein_1063 hypothetical protein -
  MPG25_RS05430 (MPG25_05430) - 1153232..1154017 (-) 786 WP_245018514.1 hypothetical protein -
  MPG25_RS05435 (MPG25_05435) - 1154017..1154346 (-) 330 Protein_1065 DUF1294 domain-containing protein -
  MPG25_RS05440 (MPG25_05440) - 1154738..1155163 (-) 426 WP_245018515.1 hypothetical protein -
  MPG25_RS05445 (MPG25_05445) - 1155213..1155395 (-) 183 WP_180435107.1 lysozyme -
  MPG25_RS05450 (MPG25_05450) - 1155406..1155966 (-) 561 WP_180396299.1 hypothetical protein -
  MPG25_RS05455 (MPG25_05455) - 1155950..1156288 (-) 339 WP_245018516.1 hypothetical protein -
  MPG25_RS05460 (MPG25_05460) - 1156477..1156839 (-) 363 WP_245018517.1 tetratricopeptide repeat protein -
  MPG25_RS05465 (MPG25_05465) dprB 1156964..1157368 (-) 405 WP_245018518.1 Holliday junction resolvase RuvX Machinery gene
  MPG25_RS05470 (MPG25_05470) dprA 1157365..1158165 (-) 801 WP_245018519.1 DNA-processing protein DprA Machinery gene
  MPG25_RS05475 (MPG25_05475) minE 1158177..1158410 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG25_RS05480 (MPG25_05480) minD 1158407..1159213 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG25_RS05485 (MPG25_05485) ilvC 1159237..1160229 (-) 993 WP_245018520.1 ketol-acid reductoisomerase -
  MPG25_RS05495 (MPG25_05495) - 1160477..1161259 (+) 783 WP_245018521.1 NAD+ synthase -
  MPG25_RS05500 (MPG25_05500) - 1161256..1162194 (+) 939 WP_245018522.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.79 Da        Isoelectric Point: 9.5494

>NTDB_id=667155 MPG25_RS05465 WP_245018518.1 1156964..1157368(-) (dprB) [Helicobacter pylori strain Hpfe059]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667155 MPG25_RS05465 WP_245018518.1 1156964..1157368(-) (dprB) [Helicobacter pylori strain Hpfe059]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAACCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAGAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGAATCTTGGAGCGCTATTACCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment