Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG25_RS00010 Genome accession   NZ_CP094121
Coordinates   1590..3029 (+) Length   479 a.a.
NCBI ID   WP_245018738.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS00005 (MPG25_00005) dnaA 1..1368 (+) 1368 WP_245018737.1 chromosomal replication initiator protein DnaA -
  MPG25_RS00010 (MPG25_00010) comH 1590..3029 (+) 1440 WP_245018738.1 competence protein Machinery gene
  MPG25_RS00020 (MPG25_00020) - 3207..3959 (+) 753 WP_245018739.1 exodeoxyribonuclease III -
  MPG25_RS00025 (MPG25_00025) - 3956..4591 (-) 636 WP_000668030.1 outer membrane protein -
  MPG25_RS00030 (MPG25_00030) - 4595..4948 (-) 354 WP_000837005.1 hypothetical protein -
  MPG25_RS00035 (MPG25_00035) recG 5030..6895 (+) 1866 WP_245018740.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54849.76 Da        Isoelectric Point: 7.0429

>NTDB_id=667144 MPG25_RS00010 WP_245018738.1 1590..3029(+) (comH) [Helicobacter pylori strain Hpfe059]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPPDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKMPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADINEHHESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPQAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667144 MPG25_RS00010 WP_245018738.1 1590..3029(+) (comH) [Helicobacter pylori strain Hpfe059]
TTGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATTTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCCTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCCACACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAATGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACCATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTAGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACAAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.914

Multiple sequence alignment