Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG74_RS07090 Genome accession   NZ_CP094120
Coordinates   1480818..1482131 (-) Length   437 a.a.
NCBI ID   WP_245069357.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475818..1487131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS07060 (MPG74_07060) nadC 1476281..1477102 (-) 822 WP_245069346.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG74_RS07065 (MPG74_07065) nadA 1477102..1478112 (-) 1011 WP_245069348.1 quinolinate synthase NadA -
  MPG74_RS07070 (MPG74_07070) - 1478102..1478905 (-) 804 WP_245069350.1 phosphatidylserine decarboxylase -
  MPG74_RS07075 (MPG74_07075) - 1478902..1479405 (-) 504 WP_245069352.1 helix-turn-helix domain-containing protein -
  MPG74_RS07080 (MPG74_07080) - 1479418..1479912 (-) 495 WP_000544981.1 hypothetical protein -
  MPG74_RS07085 (MPG74_07085) mqnP 1479905..1480747 (-) 843 WP_245069354.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG74_RS07090 (MPG74_07090) comEC/comE3 1480818..1482131 (-) 1314 WP_245069357.1 ComEC/Rec2 family competence protein Machinery gene
  MPG74_RS07095 (MPG74_07095) - 1482128..1483594 (-) 1467 WP_245069359.1 replicative DNA helicase -
  MPG74_RS07100 (MPG74_07100) - 1483605..1484999 (-) 1395 WP_245069361.1 NAD(P)H-hydrate dehydratase -
  MPG74_RS07105 (MPG74_07105) crdS 1485002..1486204 (-) 1203 WP_245070317.1 copper-sensing histidine kinase CrdS -
  MPG74_RS07110 (MPG74_07110) crdR 1486170..1486811 (-) 642 WP_220904146.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49934.88 Da        Isoelectric Point: 9.8315

>NTDB_id=667139 MPG74_RS07090 WP_245069357.1 1480818..1482131(-) (comEC/comE3) [Helicobacter pylori strain Hpfe061]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLMIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667139 MPG74_RS07090 WP_245069357.1 1480818..1482131(-) (comEC/comE3) [Helicobacter pylori strain Hpfe061]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCCGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment