Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG498_RS23595 Genome accession   NZ_CP108810
Coordinates   5269606..5270649 (+) Length   347 a.a.
NCBI ID   WP_330452202.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00870     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5264606..5275649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG498_RS23580 (OG498_23570) - 5264733..5266076 (+) 1344 WP_330452204.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG498_RS23585 (OG498_23575) - 5266165..5267424 (+) 1260 WP_329025021.1 FAD-dependent oxidoreductase -
  OG498_RS23590 (OG498_23580) dnaG 5267531..5269441 (+) 1911 WP_330452203.1 DNA primase -
  OG498_RS23595 (OG498_23585) rpoS 5269606..5270649 (+) 1044 WP_330452202.1 RNA polymerase sigma factor Regulator
  OG498_RS23600 (OG498_23590) - 5270695..5272626 (-) 1932 WP_330452201.1 ABC transporter ATP-binding protein -
  OG498_RS23605 (OG498_23595) rcrP 5272626..5274359 (-) 1734 WP_093708928.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39169.73 Da        Isoelectric Point: 5.5719

>NTDB_id=667131 OG498_RS23595 WP_330452202.1 5269606..5270649(+) (rpoS) [Streptomyces sp. NBC_00870]
MQTRTVTEAERAPAVPVQAMAADHPEGVMEEPDEPPEPRGRPETGPTSDLFRQYLREIGRIPLLTAAEEVELARCVEAGL
FAEERLARTPDPDTRLAVDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGY
KFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLTPERVGEILRLAQEPI
SLHAPVGEEEDVSLGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERRVVQLRYGLVDGRPRTLEEIGRIFGVTRE
RIRQIESKTLGRLRDHTSADQLRGYLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=667131 OG498_RS23595 WP_330452202.1 5269606..5270649(+) (rpoS) [Streptomyces sp. NBC_00870]
GTGCAGACCCGGACCGTGACCGAAGCCGAGCGCGCCCCCGCCGTCCCCGTGCAGGCCATGGCGGCGGACCACCCCGAGGG
GGTCATGGAGGAGCCGGACGAGCCCCCGGAGCCGCGCGGGAGACCGGAGACCGGGCCCACCTCGGACCTGTTCCGCCAGT
ACCTGCGCGAGATCGGCCGCATCCCGCTGCTCACCGCCGCCGAGGAGGTGGAGCTCGCCCGGTGCGTCGAGGCCGGCCTG
TTCGCCGAGGAACGCCTCGCCCGCACCCCGGACCCCGACACCCGCCTCGCCGTCGACCTGGACCGCCTCGTCGTCATGGG
CCGCACGGCCAAGCGCCGCCTCATCGAGGCCAACCTCCGGCTCGTGGTCTCCGTCGCCAAACGCTACGTGGGCCGCGGTC
TGACCATGCTGGACCTCGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTCGAGAAGTTCGACTACGCCCGCGGCTAC
AAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGGACCATAAGGGT
CCCGGTCCACGTCGTCGAGCTGATCAACCGCGTCGTCCGGGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAGCCCA
CGCCCGAGGAGGTCGCCGCCCACCTCGACCTGACGCCCGAACGGGTCGGCGAGATCCTGCGCCTCGCCCAGGAACCCATC
TCGCTGCACGCCCCGGTCGGCGAGGAGGAGGACGTCTCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCGTCCCCCGT
GGAGTCCGCGGCGTTCCTGCTGCTGCGCCAGCACCTGGAGGCGGTCCTCTCCACCCTGGGCGAGCGCGAACGCAGGGTGG
TCCAGCTGCGCTACGGACTGGTCGACGGACGGCCCCGCACGCTGGAGGAGATCGGCCGCATCTTCGGCGTGACCCGCGAA
CGCATCCGCCAGATCGAGTCCAAGACCCTCGGCCGACTGCGCGACCACACCTCCGCCGACCAGCTCCGCGGCTACCTCGA
CTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(193-269)

Sigma-70, region 4 (Sigma70_r4)

(282-334)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.493

84.15

0.366