Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG78_RS07250 Genome accession   NZ_CP094119
Coordinates   1519709..1519990 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe064     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514709..1524990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS07230 (MPG78_07230) - 1515418..1516758 (-) 1341 WP_180575820.1 hypothetical protein -
  MPG78_RS07240 (MPG78_07240) comB4 1517080..1519443 (-) 2364 WP_245040136.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG78_RS07245 (MPG78_07245) comB3 1519446..1519709 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG78_RS07250 (MPG78_07250) comB2 1519709..1519990 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG78_RS07255 (MPG78_07255) - 1520135..1520962 (-) 828 WP_245040138.1 DUF5718 family protein -
  MPG78_RS07260 (MPG78_07260) - 1521053..1522105 (-) 1053 WP_245040140.1 MnmA/TRMU family protein -
  MPG78_RS07265 (MPG78_07265) dnaG 1522102..1523781 (-) 1680 WP_245040141.1 DNA primase -
  MPG78_RS07270 (MPG78_07270) groES 1524053..1524409 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667123 MPG78_RS07250 WP_001272686.1 1519709..1519990(-) (comB2) [Helicobacter pylori strain Hpfe064]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667123 MPG78_RS07250 WP_001272686.1 1519709..1519990(-) (comB2) [Helicobacter pylori strain Hpfe064]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment