Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG78_RS07245 | Genome accession | NZ_CP094119 |
| Coordinates | 1519446..1519709 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe064 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1514446..1524709
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG78_RS07230 (MPG78_07230) | - | 1515418..1516758 (-) | 1341 | WP_180575820.1 | hypothetical protein | - |
| MPG78_RS07240 (MPG78_07240) | comB4 | 1517080..1519443 (-) | 2364 | WP_245040136.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG78_RS07245 (MPG78_07245) | comB3 | 1519446..1519709 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG78_RS07250 (MPG78_07250) | comB2 | 1519709..1519990 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG78_RS07255 (MPG78_07255) | - | 1520135..1520962 (-) | 828 | WP_245040138.1 | DUF5718 family protein | - |
| MPG78_RS07260 (MPG78_07260) | - | 1521053..1522105 (-) | 1053 | WP_245040140.1 | MnmA/TRMU family protein | - |
| MPG78_RS07265 (MPG78_07265) | dnaG | 1522102..1523781 (-) | 1680 | WP_245040141.1 | DNA primase | - |
| MPG78_RS07270 (MPG78_07270) | groES | 1524053..1524409 (+) | 357 | WP_000671946.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667122 MPG78_RS07245 WP_000584955.1 1519446..1519709(-) (comB3) [Helicobacter pylori strain Hpfe064]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667122 MPG78_RS07245 WP_000584955.1 1519446..1519709(-) (comB3) [Helicobacter pylori strain Hpfe064]
ATGATCATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATCATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |