Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG78_RS07100 Genome accession   NZ_CP094119
Coordinates   1488612..1489925 (-) Length   437 a.a.
NCBI ID   WP_245040112.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483612..1494925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS07070 (MPG78_07070) nadC 1484075..1484896 (-) 822 WP_245040106.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG78_RS07075 (MPG78_07075) nadA 1484896..1485906 (-) 1011 WP_245040108.1 quinolinate synthase NadA -
  MPG78_RS07080 (MPG78_07080) - 1485893..1486699 (-) 807 WP_156608035.1 phosphatidylserine decarboxylase -
  MPG78_RS07085 (MPG78_07085) - 1486696..1487199 (-) 504 WP_000953106.1 hypothetical protein -
  MPG78_RS07090 (MPG78_07090) - 1487212..1487706 (-) 495 WP_014537179.1 hypothetical protein -
  MPG78_RS07095 (MPG78_07095) mqnP 1487699..1488583 (-) 885 WP_245040110.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG78_RS07100 (MPG78_07100) comEC/comE3 1488612..1489925 (-) 1314 WP_245040112.1 ComEC/Rec2 family competence protein Machinery gene
  MPG78_RS07105 (MPG78_07105) - 1489922..1491388 (-) 1467 WP_245040114.1 replicative DNA helicase -
  MPG78_RS07110 (MPG78_07110) - 1491399..1492793 (-) 1395 WP_245040116.1 NAD(P)H-hydrate dehydratase -
  MPG78_RS07115 (MPG78_07115) crdS 1492796..1493998 (-) 1203 WP_245041179.1 copper-sensing histidine kinase CrdS -
  MPG78_RS07120 (MPG78_07120) crdR 1493964..1494605 (-) 642 WP_245040118.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49969.90 Da        Isoelectric Point: 9.8515

>NTDB_id=667119 MPG78_RS07100 WP_245040112.1 1488612..1489925(-) (comEC/comE3) [Helicobacter pylori strain Hpfe064]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFLQTYSFSLTRKQDFKSHWRHFIDSAHSSVLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNIPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667119 MPG78_RS07100 WP_245040112.1 1488612..1489925(-) (comEC/comE3) [Helicobacter pylori strain Hpfe064]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAATG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAGTCATGCTTTCTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGTTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGAATTAACCATTTATTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATACCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment