Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG78_RS00010 Genome accession   NZ_CP094119
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245040185.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS00005 (MPG78_00005) dnaA 1..1368 (+) 1368 WP_245040184.1 chromosomal replication initiator protein DnaA -
  MPG78_RS00010 (MPG78_00010) comH 1589..3022 (+) 1434 WP_245040185.1 competence protein Machinery gene
  MPG78_RS00020 (MPG78_00020) - 3200..3952 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  MPG78_RS00025 (MPG78_00025) - 3949..4584 (-) 636 WP_000668030.1 outer membrane protein -
  MPG78_RS00030 (MPG78_00030) - 4588..4941 (-) 354 WP_245040186.1 hypothetical protein -
  MPG78_RS00035 (MPG78_00035) recG 5023..6888 (+) 1866 WP_245040187.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54768.80 Da        Isoelectric Point: 7.6978

>NTDB_id=667104 MPG78_RS00010 WP_245040185.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe064]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDK
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADTNEHNENNENRDNVEKQVIRDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEYKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNHFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAIYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667104 MPG78_RS00010 WP_245040185.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe064]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGTGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATAAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACACTCCCTAATAACACTCCTAACGCTGATACTAATGAAC
ACAATGAAAACAATGAGAATAGGGATAATGTGGAAAAACAAGTGATTAGAGATCCTAATATTAAAGAATTTGCGTGCGGA
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAATACAAGCAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACCATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACAACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCATGGGAGAGCGAGTATCAAATCACCACGCAGTTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAGCCACGAGCTAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTTAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.276

100

0.927

Multiple sequence alignment