Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG34_RS06885 Genome accession   NZ_CP094117
Coordinates   1441568..1442881 (-) Length   437 a.a.
NCBI ID   WP_245105859.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436568..1447881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS06855 (MPG34_06855) nadC 1437031..1437852 (-) 822 WP_245105855.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG34_RS06860 (MPG34_06860) nadA 1437852..1438862 (-) 1011 WP_245105856.1 quinolinate synthase NadA -
  MPG34_RS06865 (MPG34_06865) - 1438852..1439655 (-) 804 WP_245105857.1 phosphatidylserine decarboxylase -
  MPG34_RS06870 (MPG34_06870) - 1439652..1440155 (-) 504 WP_000953083.1 hypothetical protein -
  MPG34_RS06875 (MPG34_06875) - 1440168..1440662 (-) 495 WP_245105858.1 hypothetical protein -
  MPG34_RS06880 (MPG34_06880) mqnP 1440655..1441539 (-) 885 WP_180460879.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG34_RS06885 (MPG34_06885) comEC/comE3 1441568..1442881 (-) 1314 WP_245105859.1 ComEC/Rec2 family competence protein Machinery gene
  MPG34_RS06890 (MPG34_06890) - 1442878..1444338 (-) 1461 WP_245105860.1 replicative DNA helicase -
  MPG34_RS06895 (MPG34_06895) - 1444349..1445743 (-) 1395 WP_245105861.1 NAD(P)H-hydrate dehydratase -
  MPG34_RS06900 (MPG34_06900) crdS 1445746..1446948 (-) 1203 WP_245106450.1 copper-sensing histidine kinase CrdS -
  MPG34_RS06905 (MPG34_06905) crdR 1446914..1447555 (-) 642 WP_245105862.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49954.87 Da        Isoelectric Point: 9.8515

>NTDB_id=667099 MPG34_RS06885 WP_245105859.1 1441568..1442881(-) (comEC/comE3) [Helicobacter pylori strain Hpfe065]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKSMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667099 MPG34_RS06885 WP_245105859.1 1441568..1442881(-) (comEC/comE3) [Helicobacter pylori strain Hpfe065]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGAGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAGTTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTATGAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGTTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTGCTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCACGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCCACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment