Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG34_RS05405 Genome accession   NZ_CP094117
Coordinates   1137188..1137592 (-) Length   134 a.a.
NCBI ID   WP_245105645.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132188..1142592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS05370 (MPG34_05370) - 1132482..1133552 (-) 1071 WP_245105626.1 hypothetical protein -
  MPG34_RS05375 (MPG34_05375) - 1133542..1134327 (-) 786 WP_245105629.1 hypothetical protein -
  MPG34_RS05380 (MPG34_05380) - 1134327..1134708 (-) 382 Protein_1050 DUF1294 domain-containing protein -
  MPG34_RS05385 (MPG34_05385) - 1135037..1135597 (-) 561 WP_245105633.1 lysozyme -
  MPG34_RS05390 (MPG34_05390) - 1135736..1136296 (-) 561 WP_245105638.1 hypothetical protein -
  MPG34_RS05395 (MPG34_05395) - 1136280..1136618 (-) 339 WP_245105640.1 hypothetical protein -
  MPG34_RS05400 (MPG34_05400) - 1136807..1137061 (-) 255 WP_245105643.1 sel1 repeat family protein -
  MPG34_RS05405 (MPG34_05405) dprB 1137188..1137592 (-) 405 WP_245105645.1 Holliday junction resolvase RuvX Machinery gene
  MPG34_RS05410 (MPG34_05410) dprA 1137589..1138389 (-) 801 WP_245105648.1 DNA-processing protein DprA Machinery gene
  MPG34_RS05415 (MPG34_05415) minE 1138401..1138634 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG34_RS05420 (MPG34_05420) minD 1138631..1139437 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG34_RS05425 (MPG34_05425) ilvC 1139461..1140453 (-) 993 WP_001207775.1 ketol-acid reductoisomerase -
  MPG34_RS05435 (MPG34_05435) - 1140701..1141483 (+) 783 WP_245105650.1 NAD+ synthase -
  MPG34_RS05440 (MPG34_05440) - 1141480..1142418 (+) 939 WP_245105652.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15290.83 Da        Isoelectric Point: 8.8359

>NTDB_id=667095 MPG34_RS05405 WP_245105645.1 1137188..1137592(-) (dprB) [Helicobacter pylori strain Hpfe065]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLSKKNKRFAIKDGRLDSLSACRILECYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667095 MPG34_RS05405 WP_245105645.1 1137188..1137592(-) (dprB) [Helicobacter pylori strain Hpfe065]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGAGCAAGAAAAACAAGCGGTT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.233

99.254

0.925

Multiple sequence alignment