Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG07_RS07090 Genome accession   NZ_CP094116
Coordinates   1473719..1474000 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468719..1479000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS07070 (MPG07_07070) - 1469429..1470769 (-) 1341 WP_180528407.1 hypothetical protein -
  MPG07_RS07080 (MPG07_07080) comB4 1471090..1473453 (-) 2364 WP_245045524.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG07_RS07085 (MPG07_07085) comB3 1473456..1473719 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG07_RS07090 (MPG07_07090) comB2 1473719..1474000 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG07_RS07095 (MPG07_07095) - 1474145..1474972 (-) 828 WP_088296904.1 DUF5718 family protein -
  MPG07_RS07100 (MPG07_07100) - 1475064..1476116 (-) 1053 WP_245045526.1 MnmA/TRMU family protein -
  MPG07_RS07105 (MPG07_07105) dnaG 1476113..1477792 (-) 1680 WP_245045528.1 DNA primase -
  MPG07_RS07110 (MPG07_07110) groES 1478067..1478423 (+) 357 WP_015643372.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667083 MPG07_RS07090 WP_001272686.1 1473719..1474000(-) (comB2) [Helicobacter pylori strain Hpfe066]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667083 MPG07_RS07090 WP_001272686.1 1473719..1474000(-) (comB2) [Helicobacter pylori strain Hpfe066]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment