Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG07_RS07085 | Genome accession | NZ_CP094116 |
| Coordinates | 1473456..1473719 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe066 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1468456..1478719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG07_RS07070 (MPG07_07070) | - | 1469429..1470769 (-) | 1341 | WP_180528407.1 | hypothetical protein | - |
| MPG07_RS07080 (MPG07_07080) | comB4 | 1471090..1473453 (-) | 2364 | WP_245045524.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG07_RS07085 (MPG07_07085) | comB3 | 1473456..1473719 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG07_RS07090 (MPG07_07090) | comB2 | 1473719..1474000 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG07_RS07095 (MPG07_07095) | - | 1474145..1474972 (-) | 828 | WP_088296904.1 | DUF5718 family protein | - |
| MPG07_RS07100 (MPG07_07100) | - | 1475064..1476116 (-) | 1053 | WP_245045526.1 | MnmA/TRMU family protein | - |
| MPG07_RS07105 (MPG07_07105) | dnaG | 1476113..1477792 (-) | 1680 | WP_245045528.1 | DNA primase | - |
| MPG07_RS07110 (MPG07_07110) | groES | 1478067..1478423 (+) | 357 | WP_015643372.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667082 MPG07_RS07085 WP_000584955.1 1473456..1473719(-) (comB3) [Helicobacter pylori strain Hpfe066]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667082 MPG07_RS07085 WP_000584955.1 1473456..1473719(-) (comB3) [Helicobacter pylori strain Hpfe066]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |