Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG07_RS06950 Genome accession   NZ_CP094116
Coordinates   1442590..1443903 (-) Length   437 a.a.
NCBI ID   WP_245045468.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437590..1448903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS06920 (MPG07_06920) nadC 1438051..1438872 (-) 822 WP_245045464.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG07_RS06925 (MPG07_06925) nadA 1438872..1439882 (-) 1011 WP_245045465.1 quinolinate synthase NadA -
  MPG07_RS06930 (MPG07_06930) - 1439872..1440675 (-) 804 WP_245045466.1 phosphatidylserine decarboxylase -
  MPG07_RS06935 (MPG07_06935) - 1440669..1441175 (-) 507 WP_154498225.1 helix-turn-helix domain-containing protein -
  MPG07_RS06940 (MPG07_06940) - 1441190..1441684 (-) 495 WP_000544981.1 hypothetical protein -
  MPG07_RS06945 (MPG07_06945) mqnP 1441677..1442561 (-) 885 WP_245045467.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG07_RS06950 (MPG07_06950) comEC/comE3 1442590..1443903 (-) 1314 WP_245045468.1 ComEC/Rec2 family competence protein Machinery gene
  MPG07_RS06955 (MPG07_06955) - 1443900..1445360 (-) 1461 WP_245045469.1 replicative DNA helicase -
  MPG07_RS06960 (MPG07_06960) - 1445371..1446765 (-) 1395 WP_245045470.1 NAD(P)H-hydrate dehydratase -
  MPG07_RS06965 (MPG07_06965) crdS 1446768..1447970 (-) 1203 WP_245046633.1 copper-sensing histidine kinase CrdS -
  MPG07_RS06970 (MPG07_06970) crdR 1447936..1448577 (-) 642 WP_075658246.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50264.41 Da        Isoelectric Point: 9.8315

>NTDB_id=667079 MPG07_RS06950 WP_245045468.1 1442590..1443903(-) (comEC/comE3) [Helicobacter pylori strain Hpfe066]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSVLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLIIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667079 MPG07_RS06950 WP_245045468.1 1442590..1443903(-) (comEC/comE3) [Helicobacter pylori strain Hpfe066]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTTAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAACTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGTTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAATGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTAGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment