Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG07_RS05485 Genome accession   NZ_CP094116
Coordinates   1145868..1146272 (-) Length   134 a.a.
NCBI ID   WP_245045122.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140868..1151272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS05450 (MPG07_05450) - 1141892..1142677 (-) 786 WP_245045118.1 hypothetical protein -
  MPG07_RS05455 (MPG07_05455) - 1142677..1143063 (-) 387 WP_180517296.1 DUF1294 domain-containing protein -
  MPG07_RS05460 (MPG07_05460) - 1143175..1143342 (-) 168 WP_231200692.1 hypothetical protein -
  MPG07_RS05465 (MPG07_05465) - 1143400..1144062 (-) 663 WP_342369787.1 glycoside hydrolase family protein -
  MPG07_RS05470 (MPG07_05470) - 1144091..1144651 (-) 561 WP_245045120.1 hypothetical protein -
  MPG07_RS05475 (MPG07_05475) - 1144635..1144973 (-) 339 WP_000699916.1 hypothetical protein -
  MPG07_RS05480 (MPG07_05480) - 1145162..1145740 (-) 579 WP_245045121.1 tetratricopeptide repeat protein -
  MPG07_RS05485 (MPG07_05485) dprB 1145868..1146272 (-) 405 WP_245045122.1 Holliday junction resolvase RuvX Machinery gene
  MPG07_RS05490 (MPG07_05490) dprA 1146269..1147069 (-) 801 WP_154447407.1 DNA-processing protein DprA Machinery gene
  MPG07_RS05495 (MPG07_05495) minE 1147081..1147314 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG07_RS05500 (MPG07_05500) minD 1147311..1148117 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG07_RS05505 (MPG07_05505) ilvC 1148142..1149134 (-) 993 WP_245045123.1 ketol-acid reductoisomerase -
  MPG07_RS05515 (MPG07_05515) - 1149383..1150165 (+) 783 WP_220967740.1 NAD+ synthase -
  MPG07_RS05520 (MPG07_05520) - 1150162..1151100 (+) 939 WP_245045124.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15238.76 Da        Isoelectric Point: 9.5494

>NTDB_id=667075 MPG07_RS05485 WP_245045122.1 1145868..1146272(-) (dprB) [Helicobacter pylori strain Hpfe066]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYEKLGHLGKKNKRLTIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667075 MPG07_RS05485 WP_245045122.1 1145868..1146272(-) (dprB) [Helicobacter pylori strain Hpfe066]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAAATTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CACTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment